Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59100 629 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59120 625 / 0 ATSBT4.13 subtilase 4.13 (.1) AT5G58840 624 / 0 Subtilase family protein (.1) AT5G59130 624 / 0 Subtilase family protein (.1.2) AT3G46850 622 / 0 Subtilase family protein (.1) AT3G46840 612 / 0 Subtilase family protein (.1) AT5G59090 600 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G58820 598 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59190 594 / 0 subtilase family protein (.1) AT5G58830 587 / 0 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016482 [exp] 902 / 0 AT3G46850 709 / 0.0 Subtilase family protein (.1) Lus10040750 [exp] 894 / 0 AT5G59120 714 / 0.0 subtilase 4.13 (.1) Lus10040751 [exp] 805 / 0 AT5G59100 632 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10002964 [exp] 550 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004685 [exp] 550 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10040253 [exp] 537 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10004686 [exp] 526 / 1e-177 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042555 [exp] 526 / 1e-177 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009868 [exp] 518 / 1e-175 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038001 [exp] 704 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 652 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 571 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 552 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 541 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.006G114500 [exp] 512 / 4e-172 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 495 / 6e-167 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 489 / 5e-163 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.003G120101 [exp] 465 / 5e-155 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.007G102100 [exp] 447 / 1e-146 AT2G04160 817 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10016484 pacid=23144911 polypeptide=Lus10016484 locus=Lus10016484.g ID=Lus10016484.BGIv1.0 annot-version=v1.0 ATGGCGACATTCAAGTCTTCACTACACATCCTATCAATTTGCATCATCTTTGCATCCAACTTCAACCTACTCTTTTGCAACCCGGCTCCTAGCAATGGCG ACCGGAAGGCTTACATAGTTTACATGGGAGCATTGCCCGGGCACCAATACTCCCCTGATTCTCATCATCTTTCTCTAATTCAGGAAGTCGTGGACGGCAA CCAAATTGAAGAGTTATTAATCCGGAGTTACACCAGAAGTTTCAACGGATTTGTAGCCAAACTCACTGATGCTGAGGCCGAAAATCTTTCTAGCAGGGAC GATGTAGTCTCTGTCTTTCCAAGTACAAAGTTACAGCTTCAGACCACGAGATCGTGGGATTTCCTGGGTTTTCATCGACCGACGATGATTAAGAATCTTA ATGCGGGTGGTGATATCGTGATCGGAGTTATAGACACCGGGATTTGGCCGGAATTACCTAGCTTTGACGACAGTGGTCTAGGTCCTCCTCCGGCCAAATG GAAGGGTGCGTGCAAAGGCGGACAAAATTTCACTTGCAACAACAAGATAATTGGAGCTCGGTATTACTCTGCGGTAGGTTCGGCAAGGGATTGTGTGGGC CACGGGAGCCACACGGCATCAATTGCCGCAGGGAACGTGGTAGCGAACGCCAGCTTCTACGGGGTAGCGAGCGGCTACGCTAGAGGCGGACTTCCCTCGG CCAGGATCGCCACGTACGCAGTGTGCAGCAAGGTCCACTGTGCCTCGGAAGACCTTCTGGCCGCATTTGACGACGCTATTGCTGACGGTGTCGACGTTAT ATCCATTTCCATTGCGCCGTCTACCCAACATAACCTCGACACAGACCCCATTTCGATAGGCGGGTTTCACGCTAAGAACAAAGGAATCCTGACTGTACAA AGTGCCAGCAACGAGGTTGCACCTAGCCCCGCTAGCACCACGAGCATGGCTCCTTGGTTGCTCTCTGTAGCTGCCAGTACCATCGACCGAAAGTTCGAAT CCAAAATTGTTCTCGGAAACGGAGACATAGTTACGGGGTACTCTGTAAACGGATTCACTCCGAATGGGAAAAGGTTCCCTTTGGTGGATGCGATCAATGT AACATCGGCATCCTACTGCCCGGGCGCAAGTTCTTGCACCTGTGTTGATAGCGACTTAGCGAAAGGGAAAATTGTGCTATGCAACACGACAGACTGGCCG GAGTTGAATATGCACCCAGAGGCTGAGGGACTTATCTACATTTACGAAAGGCCGCGAGACGTTCAAGATGTCGTCCCGTTGCCTGGTACCGCTCTGGACA CCCGATTCTTCCTTGCTGTCGAGGCCTATCGCCGGTCTACTTCTAACCCGGTTGCCAAGATATTGAAAAGTGAGACTGTGACAAATCATGGAGCTCCAGT AGTAGCCACATTCTCATGCAGAGGCCCTAATGTTATGGTACCTGGTATTCTCAAGCCGGATGTGAGTGCTCCCGGAGTGGATATATTGGCCGGGTGGTCT CCGGTTATATCGCCCGGCGACGTCCCATACGACCGGAGACGGAACAATTTCAATGTCATGTCCGGAACATCCATGTCGTGTCCACATGTCGCCGGAATTG CCGCTTACATCAAGTCTCTGCACCCAAATTGGTCACCTTCCGCCATCAAATCCGCTATTATGACAACGGCCACTCCTATGCATCCTGTCCGTGCCCATAG TATCGAAGCAGAATTCGCGTACGGGTCTGGTCAGCTGAATCCGCTGAACGCCTCGAATCCAGGACTCGTGTACGAAACCTCGCCAGTGGACGATGTCAAT TTGCTCTGCAACTTGGGTTACAACACCGAGAAAGTCCAAGCTATTACCAGTGACAAGACTAGCACTTGCAAGGGTCGCCCTGATCCGACAACGATAAACG ACTTCAATTACCCTTCTATCACTGCTGCCCTTCAGCCCAAGACCGCGGCTAATTCCTTCTCGATCCGGTTTACGAGAACGGTGACTAATGTTGGATCCGC AAAGTCGACGTATAAAGCACGAATTGTCGGCGGGAAAGGGCTGAAGATTGAAGTCTCGCCGGGTGTTCTGTCGTTTGGGTCTTTGAATGAGAAGATGTCT TTCAATGTTACAGTTTGTGGTGGTGATGATGTCCAACACAAAGGATTTTTTGCATCTGCTGCATTGATTTGGAGTGATGGGATGCATAGTGTGAGGAGTC CGATTGTCATTTACACCCCTTGA
AA sequence Show only first row Show all	>Lus10016484 pacid=23144911 polypeptide=Lus10016484 locus=Lus10016484.g ID=Lus10016484.BGIv1.0 annot-version=v1.0 MATFKSSLHILSICIIFASNFNLLFCNPAPSNGDRKAYIVYMGALPGHQYSPDSHHLSLIQEVVDGNQIEELLIRSYTRSFNGFVAKLTDAEAENLSSRD DVVSVFPSTKLQLQTTRSWDFLGFHRPTMIKNLNAGGDIVIGVIDTGIWPELPSFDDSGLGPPPAKWKGACKGGQNFTCNNKIIGARYYSAVGSARDCVG HGSHTASIAAGNVVANASFYGVASGYARGGLPSARIATYAVCSKVHCASEDLLAAFDDAIADGVDVISISIAPSTQHNLDTDPISIGGFHAKNKGILTVQ SASNEVAPSPASTTSMAPWLLSVAASTIDRKFESKIVLGNGDIVTGYSVNGFTPNGKRFPLVDAINVTSASYCPGASSCTCVDSDLAKGKIVLCNTTDWP ELNMHPEAEGLIYIYERPRDVQDVVPLPGTALDTRFFLAVEAYRRSTSNPVAKILKSETVTNHGAPVVATFSCRGPNVMVPGILKPDVSAPGVDILAGWS PVISPGDVPYDRRRNNFNVMSGTSMSCPHVAGIAAYIKSLHPNWSPSAIKSAIMTTATPMHPVRAHSIEAEFAYGSGQLNPLNASNPGLVYETSPVDDVN LLCNLGYNTEKVQAITSDKTSTCKGRPDPTTINDFNYPSITAALQPKTAANSFSIRFTRTVTNVGSAKSTYKARIVGGKGLKIEVSPGVLSFGSLNEKMS FNVTVCGGDDVQHKGFFASAALIWSDGMHSVRSPIVIYTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59100			Subtilisin-like serine endopep...		Lus10016484 [exp]	0	1
AT5G19580			glyoxal oxidase-related protei...		Lus10012979 [exp]	2.2	0.8695
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040310 [exp]	10.6	0.8792
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10024069 [exp]	14.5	0.8561
AT1G50380			Prolyl oligopeptidase family p...		Lus10032964 [exp]	15.2	0.8773
AT1G74220			unknown protein		Lus10040518 [exp]	18.2	0.8749
AT3G19550			unknown protein		Lus10013901 [exp]	22.4	0.8699
AT3G19550			unknown protein		Lus10002114 [exp]	28.2	0.8664
AT3G19550			unknown protein		Lus10002115 [exp]	30.5	0.8630
AT1G21850		SKS8	SKU5 similar 8 (.1)		Lus10022648 [exp]	30.6	0.8609
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039863 [exp]	32.7	0.8563

Compare expression of checked genes

Lus10016484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.