Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29410 317 / 4e-106 ATMTPB1, MTPB1 metal tolerance protein B1 (.1) AT3G58810 268 / 1e-86 ATMTPA2, MTP3, MTPA2, ATMTP3 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) AT3G61940 258 / 1e-83 ATMTPA1, MTPA1 Cation efflux family protein (.1) AT2G46800 169 / 3e-48 ATMTP1, ZAT1, ZAT, ATCDF1 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) AT2G04620 67 / 1e-11 Cation efflux family protein (.1) AT3G12100 43 / 0.0003 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040744 [exp] 640 / 0 AT2G29410 344 / 1e-116 metal tolerance protein B1 (.1) Lus10002674 [exp] 280 / 3e-91 AT3G58810 503 / 5e-179 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Lus10012604 [exp] 165 / 1e-46 AT3G61940 500 / 2e-177 Cation efflux family protein (.1) Lus10030192 [exp] 104 / 4e-27 AT2G46800 221 / 1e-72 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Lus10004102 [exp] 62 / 3e-10 AT2G04620 784 / 0.0 Cation efflux family protein (.1) Lus10013358 [exp] 62 / 5e-10 AT2G04620 783 / 0.0 Cation efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G245800 [exp] 389 / 2e-134 AT2G29410 336 / 7e-114 metal tolerance protein B1 (.1) Potri.014G106200 [exp] 283 / 3e-92 AT2G46800 277 / 4e-90 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.002G180100 [exp] 274 / 5e-89 AT2G46800 502 / 3e-178 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.011G150600 [exp] 167 / 1e-47 AT3G58810 281 / 2e-91 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Potri.001G450900 [exp] 164 / 3e-46 AT2G46800 285 / 3e-92 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.005G110300 [exp] 62 / 5e-10 AT2G04620 483 / 2e-158 Cation efflux family protein (.1) Potri.016G045200 [exp] 42 / 0.0006 AT3G12100 536 / 0.0 Cation efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10016487 pacid=23144816 polypeptide=Lus10016487 locus=Lus10016487.g ID=Lus10016487.BGIv1.0 annot-version=v1.0 ATGGTTTATCATTCCAGGCAAATGGAGGAATATGATGAAGTCCCAATTTTGAGTTCGGACAGCCAGAGGGATATCGAGATGGTGATTCCTACTGAGGAAA AGACTGAAATGGGAGGAAAATCGTGTGAATGTGTTTGTGCCTTCTCTAAGCACGCAGATGACGCCGAAGAATCAGAAGATCGATCGAAATCGGCTGTGAA GCTATCCGGGCTCGTGGTTTTCTACTTGTTAGTTATGGCGGTTGAGATTATTGGTGGCATGAGGGCCAACAGCCTTGCAGTTCTTACGGATGCAGCGCAT CTGTTTACTGATGTTGCTGGCTTTGCTGTATCGCTCTTCACGCTGTGGGTTTCGGGTTGGAAGGCTACATCGGACCATTCGTTTGGTTTCAGTCGGCTCG AAGTCCTGGGCGCCTTACTCTCCGTTCAGCTCATCTGGGTCATATCCGTAGTCCTGATTTACGAGGCAGTTAGTAGGATCCTCCACAAACAGGAAGAAGT CAAAGGTGGACTCATGTTTTGGATTGCAGCTTTCGGGTTCATCATCAACTTGATCATGGTCCTCTGGCTCGGTCATGATCACTCTGGTCACGCTCATCAC GATCATAATCACAGTGATTCTCATCACGATCATAATCACCATCACTGTCATGGTCATGATGCTCATGACAACAAGCATCTTCCTGCAAGAATTGAAGAAC ACGAAGAGACCGAACTGGTACTAGGGTCTCCGGCAAAGGACAAATTCCTGAACATCAATGTGCAAGGCGCCTATCTTCATGTTATTGCCGATCTGATCCA ATCGATCGGAGTAATGATTGCCGGAGCTGTTATATGGGTAAAGCCGAAGTGGTTGGTGGTTGATCTCATCTGCACGCTGGTATTCTGTACTTTCGTTCTC TTCACAACGCTACCTATGCTGACGGATATTTACAACATACTGATGGAGAGGACGCCTAGGGACATCAATCTGGTGAAGCTGGAGAACGATCTTATAAGTA TGGGAGGCGTTCGAGAAATCCACGACCTTCATGTCTGGTCCATAACCATCGGGAAACGAGTCTTGTCTTGCCATGTGATAGCCAGCGAGCCTGAATCGAG GGAGCTAGTCGACAAGATTAAGGACTACTGTCGGGAAACGTACCGAATTTGCCATTGTACTGTCCAGATTGAGTTCAAAGGAACAGCTTAG
AA sequence Show only first row Show all	>Lus10016487 pacid=23144816 polypeptide=Lus10016487 locus=Lus10016487.g ID=Lus10016487.BGIv1.0 annot-version=v1.0 MVYHSRQMEEYDEVPILSSDSQRDIEMVIPTEEKTEMGGKSCECVCAFSKHADDAEESEDRSKSAVKLSGLVVFYLLVMAVEIIGGMRANSLAVLTDAAH LFTDVAGFAVSLFTLWVSGWKATSDHSFGFSRLEVLGALLSVQLIWVISVVLIYEAVSRILHKQEEVKGGLMFWIAAFGFIINLIMVLWLGHDHSGHAHH DHNHSDSHHDHNHHHCHGHDAHDNKHLPARIEEHEETELVLGSPAKDKFLNINVQGAYLHVIADLIQSIGVMIAGAVIWVKPKWLVVDLICTLVFCTFVL FTTLPMLTDIYNILMERTPRDINLVKLENDLISMGGVREIHDLHVWSITIGKRVLSCHVIASEPESRELVDKIKDYCRETYRICHCTVQIEFKGTA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Lus10016487 [exp]	0	1
AT5G49710			unknown protein		Lus10000765 [exp]	5.1	0.9540
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	8.1	0.9473
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	9.4	0.9474
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037577 [exp]	12.0	0.9391
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	12.4	0.9319
AT1G55160			unknown protein		Lus10019322 [exp]	12.7	0.9220
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Lus10007065 [exp]	12.7	0.9345
AT2G37480			unknown protein		Lus10003982 [exp]	13.8	0.9178
AT2G32070			Polynucleotidyl transferase, r...		Lus10018330 [exp]	13.9	0.9306
AT4G17960			unknown protein		Lus10000314 [exp]	15.6	0.9340

Compare expression of checked genes

Lus10016487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.