Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16810 451 / 8e-158 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040743 [exp] 649 / 0 AT5G16810 488 / 7e-172 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G050500 [exp] 511 / 0 AT5G16810 544 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10016488 pacid=23144832 polypeptide=Lus10016488 locus=Lus10016488.g ID=Lus10016488.BGIv1.0 annot-version=v1.0 ATGTTTGCCGCGACGACAGCCACAGTTGCTGCAGCAGCTGAACTCGCTGCTTTCTGCAGTTGTAATCACAAGTTCTCTGCCTCATTTGCTAAAAATCGAT GGAAATGTCGATCCAGTCTAATCACCAGCTCCTCATCGTTCGAAGTAGGCGCACTCATCGGAAGTTACGGCTTCATGAACGTCACAAGTTATTCAGGAGG TGGCAGTTTGAGCTATTCGTCGGCTGATCTGGAAAATATGAAAGTTCAAGATGTAGGGGAAGGCAATGTCAAGATCAAGCTTTATGAAGGTAGAGTAGCT GAGGGCCAACTTAGGGGAACTCCTATTTTGTTTAAGGTTTATCCAGGCCAAAGGGCTGGTGGTATCGAGGCTGATATGATGGCTGCAAATGAGCTCAATG CTCACACTTCTCTTCAGAGCACTCCAGAAGGTATATGTCGGAATCTAGTGGTTCTACTTGGAGGATTTGAAACAAAAACTGGGGAACAGTGGCTTGCTTT CCGCAACGATGGGAAATATAGTGCAGCGGATTATGCAGCATTGGTCAGCAAGAGAATATCAGCGAGCTCTTCAAAGAAAGAAGAGTCTTGGAATAGTTTT CAAAAGGAAAAAGACATGGAGTATCGAAGATATTATGTTATCAGGATGTTTCAAAGTGTTCTTCGCGGTCTAGCATTCATGCATGACCATGACAGATTGC ACCAGAGTCTTGGACCATCTTCTGTTCTTCTCAATACCGTTGTTGAAAAAGATGCAGCTTACCTAATTCCAAGACTTCGGGACTTGTCATTTTCTGTTGA TATGAGCTTGGACAATATTCCACAACAAGGAGTTGGATCACTCTCAGAAGGTCTCTGGAGAAGGGCAACAGCCGCTGGTGCCTACTCCACTTTGGAGAAA CGTTCCTTTGGAATTGCCGATGACATATATGCTGCAGGTCTTCTTTTAGCATACTTGGCTTTTGTTCCCTTCAGCGAAGCAGGCATCGTCGATAGTCTCT CCTTGCAGAGGCTATTAGAGAATACGTTTCGACTTGATCTTGAAGCTACCAGAGAGTACTGTTTAGCTGATGACCGATTGGAAGATGCTGTCAAGTTTTT GGATCTAGGTGATCAGTCCGGTTGGAAACTACTTGAGGCAATGTTGAATCCAGATTTCCGGCAAAGACCAACTGCAGAAGCTGTGCTGAACCACTCTTTT CTAAATACCTCTCTTCGTTAG
AA sequence Show only first row Show all	>Lus10016488 pacid=23144832 polypeptide=Lus10016488 locus=Lus10016488.g ID=Lus10016488.BGIv1.0 annot-version=v1.0 MFAATTATVAAAAELAAFCSCNHKFSASFAKNRWKCRSSLITSSSSFEVGALIGSYGFMNVTSYSGGGSLSYSSADLENMKVQDVGEGNVKIKLYEGRVA EGQLRGTPILFKVYPGQRAGGIEADMMAANELNAHTSLQSTPEGICRNLVVLLGGFETKTGEQWLAFRNDGKYSAADYAALVSKRISASSSKKEESWNSF QKEKDMEYRRYYVIRMFQSVLRGLAFMHDHDRLHQSLGPSSVLLNTVVEKDAAYLIPRLRDLSFSVDMSLDNIPQQGVGSLSEGLWRRATAAGAYSTLEK RSFGIADDIYAAGLLLAYLAFVPFSEAGIVDSLSLQRLLENTFRLDLEATREYCLADDRLEDAVKFLDLGDQSGWKLLEAMLNPDFRQRPTAEAVLNHSF LNTSLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16810			Protein kinase superfamily pro...		Lus10016488 [exp]	0	1
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Lus10042822 [exp]	1.7	0.9577
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10040937 [exp]	2.4	0.9458
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043143 [exp]	6.7	0.9435
AT5G16810			Protein kinase superfamily pro...		Lus10040743 [exp]	9.5	0.9382
AT3G61080			Protein kinase superfamily pro...		Lus10041374 [exp]	10.2	0.9354
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10038292 [exp]	11.8	0.9388
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012886 [exp]	12.0	0.9302
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	12.0	0.9246
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	12.0	0.9368
AT1G51110			Plastid-lipid associated prote...		Lus10012100 [exp]	18.5	0.9169

Compare expression of checked genes

Lus10016488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.