Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59160 571 / 0 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT2G39840 558 / 0 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT2G29400 554 / 0 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT3G46820 553 / 0 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT1G64040 514 / 0 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT4G11240 511 / 0 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G43380 502 / 0 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT5G27840 487 / 6e-175 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT3G05580 476 / 7e-171 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42500 294 / 3e-99 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004989 [exp] 614 / 0 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004692 [exp] 570 / 0 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040259 [exp] 568 / 0 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10030163 [exp] 562 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 561 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10022019 [exp] 561 / 0 AT2G39840 565 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10042559 [exp] 557 / 0 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040742 [exp] 533 / 0 AT5G59160 466 / 1e-166 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10021872 [exp] 506 / 0 AT2G39840 523 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G037700 [exp] 584 / 0 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.001G245700 [exp] 582 / 0 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.008G060800 [exp] 565 / 0 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.010G197600 [exp] 564 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.013G045900 [exp] 555 / 0 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 547 / 0 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G166300 [exp] 528 / 0 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G098600 [exp] 523 / 0 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.016G142700 [exp] 489 / 4e-176 AT2G39840 493 / 1e-177 type one serine/threonine protein phosphatase 4 (.1) Potri.006G113100 [exp] 482 / 6e-173 AT2G39840 488 / 4e-175 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10016489 pacid=23144788 polypeptide=Lus10016489 locus=Lus10016489.g ID=Lus10016489.BGIv1.0 annot-version=v1.0 ATGGCTCAACAAGGGCAGGCTTCCATCGACCCTACAGTTCTGGACGACATAATCAACCGTCTGCTGGAATTTAAGCAAACTAGGTCCGCTAAGCAACAGC AAGTCCAGCTGAGTGAGAGCGAGATCCGCCAGCTCTGTACTGTGTCCAGAGAAATTTTTCTTCAGCAGCCTAATCTTCTGGAGCTCGAGGCTCCCATTAA GATCTGCGGTGACATTCATGGACAGTATTCTGATCTTTTGAGGCTTTTTGAGTATGGTGGCTATCCTCCTAGTGCCAATTATCTCTTCCTTGGGGATTAT GTTGATCGTGGAAAGCAGAGTTTAGAAACAATTTGTCTTTTGCTTGCTTACAAAATCAAGTACCCCGAGAACTTCTTTCTCTTAAGAGGAAACCATGAAT CTGCATCTATTAATCGAATTTATGGATTCTATGATGAATGCAAGCGCCGGTTCAATGTCCGACTTTGGAAAACTTTCACCGACTGTTTTAATTGTCTACC GGTTGCTGGTCTGATAGACGACAAAATACTGTGCATGCATGGAGGCCTTTCTCCTGATTTAACAAGTTTAGACGAGATAAGGAATCTGTCCCGTCCAGCT GATGTTCCTGATGCTGGTTTACTATGTGATCTACTCTGGTCTGATCCTGGAAAGGACGTTAAAGGATGGGGAATGAATGACCGTGGGGTCTCCTACACCT TTGGGCCAGATAAGGTGTCAGAATTCTTGATGAAGAATGATATGGACCTAATTTGTCGTGCTCATCAGGTTGTCGAGGACGGATATGAGTTCTTCGCGGA CAGACAGCTCGTGACAATATTTTCTGCTCCGAATTACTGTGGCGAGTTTGATAATTCGGGTGCCATGATGAGCGTCGATGAAACCTTAATGTGCTCTTTC CAAATACTTAAGCCAGCTGACAAGAAGTTTAGATTCATGTGA
AA sequence Show only first row Show all	>Lus10016489 pacid=23144788 polypeptide=Lus10016489 locus=Lus10016489.g ID=Lus10016489.BGIv1.0 annot-version=v1.0 MAQQGQASIDPTVLDDIINRLLEFKQTRSAKQQQVQLSESEIRQLCTVSREIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGYPPSANYLFLGDY VDRGKQSLETICLLLAYKIKYPENFFLLRGNHESASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAGLIDDKILCMHGGLSPDLTSLDEIRNLSRPA DVPDAGLLCDLLWSDPGKDVKGWGMNDRGVSYTFGPDKVSEFLMKNDMDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNSGAMMSVDETLMCSF QILKPADKKFRFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10016489 [exp]	0	1
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Lus10026164 [exp]	82.6	0.5768
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031842 [exp]	97.4	0.5497
AT1G72190			D-isomer specific 2-hydroxyaci...		Lus10009456 [exp]	103.7	0.5030
AT1G76270			O-fucosyltransferase family pr...		Lus10012270 [exp]	123.1	0.5037

Compare expression of checked genes

Lus10016489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.