Plant FIBer expression Database

Lus10016490 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040741
[exp]
132 / 2e-32 AT3G22142 94 / 5e-20 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10016490 pacid=23144904 polypeptide=Lus10016490 locus=Lus10016490.g ID=Lus10016490.BGIv1.0 annot-version=v1.0
ATGCGGACTATTGTGCATTGCGTCCTTGTTTTGGTGCTATGGGTGACGACATTTCAAGTTGATGTTGTTGTGTCGTCCGTTGCTCGTCTCAACGAACGCG
AGTTCGGAGGAGTGAAAGTTGTTCGTGATCCTACGCCACCATCCAATGGATATACTCCACCTTCGCAGAGCCCTCCGACACAGACCCCGCCATTCGGTGG
GTATACTCCGCCCTCTCAGAGTCCACCTATGGAAACACCGCCTGTTCATGGGTACACTCCGCCATCTCAAAGCCCACCGATCCAGACACCACCATCTCAT
GGGTATAGTCCACCATCGCAGAGCCCCCCGACAATAACGCCGCCATCCCATGGGTATACTCCACCTTCCCAGGGCCCTCCAGTCCAAACTCCACCATCAC
ATGGCTACACTCCACCAGTTCATACACCACCATCGCTTGGGTACACTCCTCCCTCCCAGAGCCCTCCGGTCCAAACTCCACCTTCTCATGGCTATACTCC
ACCTTCTCAAAGTCCTCCTACACAAACACCTCCATCTCATGGTTACACTCCTCCCTCCCAAAGCCCTCCAACACAAACACCACCATCACATGGGTACACA
CCACCCTTGCAGAGTCCTCCAGTCCAATCTCCTCCTTCTCATGGCTACACTCCACCCTCGCAAAGCCCTCCAGTTCATACGCCGCCATCACATGGGTATA
CTCCTCCCTCCCAAAGCCCTCCAACACAAACTCCGCCATCCCATGGCTACACACCACCCTCTCAAAGCCCTCCGACCCAAACACCCCCTTCTCATGGTTA
CACGCCTCCTTCTCATAATCCTCCGACACAAACACCACCATCCCATGGGTACACTCCCCCTTCCCAGAGCCCTCCGGTCCAAACTCCGCCATCTCATGGG
TACACTCCGCCATCACAGAGCCCTCCGACTGTAACACCGCCATCCCATGGGTACACTCCACCTTCCCAGAGCCCCCCAGTCCAAACTCCACCATCTCATG
GTTATACTCCACCCTCTCAGAGCCCGCCGGTTCAAACTCCACCATCACATGGCTATACTCCACCTTCTCAAAGCCCTCCAGTCCATACACCACCGTCGCA
TGGGTACACTCCTCCCTCCCACAGCCCTCCGATCCAAACTCCACCTTCCCATGGGTATACTCCACCCTCTCAAAGCCCTCCTACACAAACACCTCCCTCT
CATGGTTACACTCCTCCTTCCCAAAGCCCCCCGACGCAAACGCCACCATCTCATGGGTACACACCACCCTCCCAGAGCCCACCAGTACAAACACCACCAT
CTCATGGATACACTCCACCCTCGCAAAGCCCTCCAGTCCAGACACCTCCATCACATGGGTACACTCCGCCCTCCCAAAGCCCTCCGACTCAAACTCCACC
ATCTCATGGATACACTCCACCCTCGCAGAGTCCTCCAGTTCAGACACCTCCATCGCAAGGGTACACTCCTCCCTCCCAAAGCCCTCCGACTGAAACTCCA
CCATCTCAAAGCCCTCCGGTCCAAACGCCACCATCGCATGGGTACACACCTCCCTCTCAAAGCCCTCCAATCCAAACACCGCCAGTTCATGGGTACACCC
CACCCTCTCCAAGTCCTCCGACACTGACGCCACCAACTCATGGGTACACTCCACCTTCCCAAAGCCCTCCAGTTCAAACTCCGCCATCACATGGGTACAC
ACCACCTTCCCAGAACCCTCCGGTGCAAACACCTCCATCCCAGAGTCCTCCTATCCAAACACCACCGTCGCACGGTTACACACCTCCATCCCAAAGCCCT
CCTGTCCAAACTCCGCCATCTCATGGGTACACTCCACCCTCTCAGAACCCTCCGACTCAAACACCGCCATCGCACGGGTACACTCCACCCTCTCATAACC
CTCCGACTCAAACGCCGCCGTCACATGGATACACTCCACCCTCTCAAAGCCCTCCTACCCAAACCCCACCAACTCATGGGTATACTCCACCTTCCCAAAC
CCCTCCAGTCCAAACACCACCATCTCAAGGATATACTCCACCGTCCCAAAGCCCTCCAACCCAAACCCCACCAACCCATGGATATACCCCACCATCTCAG
AGTCCACCTACCCAAACTCCACCAACTCATGAATACACCCCGCCTTCTCATACCCCTCCTATCCAAACCCCACCGACTCATGGTTACACTCCACCGTCTC
ACAACCCTCCAAGCCAAACACCAGCATATGGTTCACCTCCACCGTACTCCACCCACCATCAGCCATCTTCCTAA
AA sequence
>Lus10016490 pacid=23144904 polypeptide=Lus10016490 locus=Lus10016490.g ID=Lus10016490.BGIv1.0 annot-version=v1.0
MRTIVHCVLVLVLWVTTFQVDVVVSSVARLNEREFGGVKVVRDPTPPSNGYTPPSQSPPTQTPPFGGYTPPSQSPPMETPPVHGYTPPSQSPPIQTPPSH
GYSPPSQSPPTITPPSHGYTPPSQGPPVQTPPSHGYTPPVHTPPSLGYTPPSQSPPVQTPPSHGYTPPSQSPPTQTPPSHGYTPPSQSPPTQTPPSHGYT
PPLQSPPVQSPPSHGYTPPSQSPPVHTPPSHGYTPPSQSPPTQTPPSHGYTPPSQSPPTQTPPSHGYTPPSHNPPTQTPPSHGYTPPSQSPPVQTPPSHG
YTPPSQSPPTVTPPSHGYTPPSQSPPVQTPPSHGYTPPSQSPPVQTPPSHGYTPPSQSPPVHTPPSHGYTPPSHSPPIQTPPSHGYTPPSQSPPTQTPPS
HGYTPPSQSPPTQTPPSHGYTPPSQSPPVQTPPSHGYTPPSQSPPVQTPPSHGYTPPSQSPPTQTPPSHGYTPPSQSPPVQTPPSQGYTPPSQSPPTETP
PSQSPPVQTPPSHGYTPPSQSPPIQTPPVHGYTPPSPSPPTLTPPTHGYTPPSQSPPVQTPPSHGYTPPSQNPPVQTPPSQSPPIQTPPSHGYTPPSQSP
PVQTPPSHGYTPPSQNPPTQTPPSHGYTPPSHNPPTQTPPSHGYTPPSQSPPTQTPPTHGYTPPSQTPPVQTPPSQGYTPPSQSPPTQTPPTHGYTPPSQ
SPPTQTPPTHEYTPPSHTPPIQTPPTHGYTPPSHNPPSQTPAYGSPPPYSTHHQPSS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G22142 Bifunctional inhibitor/lipid-t... Lus10016490
[exp]
0 1
AT2G30770 CYP71A13 cytochrome P450, family 71, su... Lus10043310
[exp]
13.3 0.8064
AT3G55400 OVA1 OVULE ABORTION 1, methionyl-tR... Lus10001706
[exp]
21.5 0.6615
Lus10006075
[exp]
23.3 0.7827
AT5G11630 unknown protein Lus10002035
[exp]
24.7 0.7113
AT4G21380 ARK3 receptor kinase 3 (.1) Lus10027823
[exp]
27.7 0.6156
AT1G29670 GDSL-like Lipase/Acylhydrolase... Lus10029280
[exp]
27.9 0.7778
AT1G67623 F-box family protein (.1) Lus10006434
[exp]
28.6 0.7761
AT5G36250 Protein phosphatase 2C family ... Lus10012218
[exp]
34.3 0.7116
AT5G55690 MADS MADS-box transcription factor ... Lus10014095
[exp]
37.0 0.7501
AT1G75030 ATLP-3 thaumatin-like protein 3 (.1) Lus10037483
[exp]
37.9 0.7587

Lus10016490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.