Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59210 489 / 3e-172 myosin heavy chain-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040740 [exp] 791 / 0 AT5G59210 517 / 0.0 myosin heavy chain-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G245500 [exp] 533 / 0 AT5G59210 525 / 0.0 myosin heavy chain-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016491 pacid=23144833 polypeptide=Lus10016491 locus=Lus10016491.g ID=Lus10016491.BGIv1.0 annot-version=v1.0 ATGGACTCACGTCATGCAACTCTTGGTCGACGAACTCTGGAAGAGATTCGTCAAAAGAGAGCGGCAGAGAGATTGAGCAAAACATCTTTTGGACCAGATC TCGGAAATCCTTCAATCCTTGCAGATACTGTTGGAATAAAGAAATCAGAGAGTGCAAATCGACTCTCAGAGGCTGATGTTAGTGGTGTAGTAGCGCAGCT TCAAGAGCTGCAGAGAAAGAATTTGGATTTGGAGGAAAACAACAGGTTATTGTCTTCGAAGCTTCAAGCGAAGACGACGGAGAACGAGACATTACAAAAT CGAGTAAATGAGCTGGAACGGACCACTGTTCCATCTTTAAGGAAAGCCCTGAAGGATGTAGCTATGGAAAAAGATGCAGCAGTTGTTGCAAAGGAGGACC TTTCAGCCCAGCTTCGTACACTTAAGAAACGGCTAAAGGATGCAGAAGAGGAACAATATCGAGCTGAGGAAGATGCTGCAGCATTGCGAGCAGAACTGAA CTCTATACAGAGGCAAGCAATGAGTAATAGCCTCAATGGTATCACTTCTATTGGTATTTCAGCAGAACAGTTTCAGAGCTTGGAAAAGGAGTTGGCTAGT GTGAAGTCTGATCTACAGCAAGAATCTTTCATGAGGCAACGGGAGCAACAACAGTTTCTCGAGGAGAAAGTCAAGGTTTCTACCCTCGAGGCTGAAAGGC ATCAGCTGGAAGAAAAACTTCTTTCTCTGCCCCAAAAAGCACCAGAACAAGTAGTAGAAAAAGTTGCTCAGAATGGACTTTCAATGGAGGATAAAGAGAT ACTTGAGAGGCAGTTGCATGACATGGCTGTTGCAGTTGAGAGATTGGAAAGTAGTAGGCAGAAACTACTGAAGGAGATTGATTCTCAATCTGCAGAGATA GAGCAGCTTTTTGAGGAAAATTCTCACCTTGTTTCCTCGTGTCAAGACGCAATGAACAGAGCAAATCAATGGGAGAACCAGTTAAAGGAATGTCTCAAGA AGAACGAAGAACTCTGCACAATGCTCAACAAATTCAGTACAGAACAAGCAGCTGTACTGTCTAACAACGAAACACTTCGAGGCTCAAAGGAAGGTGAAAG CGATAGCTTAAATGCACAAGGACATATGCCTGAGGCTCTCTCCCTTAAGGGAGAGCTCGTAAAAGAACAAAGCAGAGCAGTAGCATTATCGGCAGAGGTA ATGCAGCTATCGGCAAAGCTCCAGCAGGCTACGCAAGCCTACAATAGTCTTGCACATGCCTATAGACCAGTGCTTCGGAACATCGAGAGCAGTCTGATCA AAATGAAGCAGGACGGCTCTACGACAGTTCAGTGA
AA sequence Show only first row Show all	>Lus10016491 pacid=23144833 polypeptide=Lus10016491 locus=Lus10016491.g ID=Lus10016491.BGIv1.0 annot-version=v1.0 MDSRHATLGRRTLEEIRQKRAAERLSKTSFGPDLGNPSILADTVGIKKSESANRLSEADVSGVVAQLQELQRKNLDLEENNRLLSSKLQAKTTENETLQN RVNELERTTVPSLRKALKDVAMEKDAAVVAKEDLSAQLRTLKKRLKDAEEEQYRAEEDAAALRAELNSIQRQAMSNSLNGITSIGISAEQFQSLEKELAS VKSDLQQESFMRQREQQQFLEEKVKVSTLEAERHQLEEKLLSLPQKAPEQVVEKVAQNGLSMEDKEILERQLHDMAVAVERLESSRQKLLKEIDSQSAEI EQLFEENSHLVSSCQDAMNRANQWENQLKECLKKNEELCTMLNKFSTEQAAVLSNNETLRGSKEGESDSLNAQGHMPEALSLKGELVKEQSRAVALSAEV MQLSAKLQQATQAYNSLAHAYRPVLRNIESSLIKMKQDGSTTVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59210			myosin heavy chain-related (.1...		Lus10016491 [exp]	0	1
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	2.2	0.9610
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10006527 [exp]	2.2	0.9443
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	6.3	0.9482
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10022062 [exp]	7.0	0.9421
					Lus10006087 [exp]	7.1	0.9412
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	8.9	0.9446
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10001598 [exp]	11.2	0.9415
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	11.3	0.9368
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10015379 [exp]	13.3	0.9330
AT1G15740			Leucine-rich repeat family pro...		Lus10038107 [exp]	14.8	0.9396

Compare expression of checked genes

Lus10016491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.