Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07430 406 / 1e-139 HAI2 highly ABA-induced PP2C gene 2 (.1) AT2G29380 398 / 2e-137 HAI3 highly ABA-induced PP2C gene 3 (.1) AT5G59220 366 / 2e-124 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT3G11410 353 / 2e-119 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT5G51760 259 / 3e-82 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT5G57050 254 / 7e-81 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT4G26080 254 / 4e-80 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT1G72770 238 / 4e-73 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT1G17550 236 / 2e-72 HAB2 homology to ABI2 (.1) AT1G43900 150 / 2e-41 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040738 [exp] 677 / 0 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10040270 [exp] 372 / 2e-126 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10004703 [exp] 368 / 9e-125 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1) Lus10012962 [exp] 236 / 7e-74 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10026447 [exp] 239 / 3e-73 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10025000 [exp] 238 / 1e-72 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10019017 [exp] 218 / 3e-67 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1) Lus10003399 [exp] 206 / 1e-63 AT2G29380 252 / 2e-82 highly ABA-induced PP2C gene 3 (.1) Lus10034965 [exp] 197 / 4e-59 AT1G72770 249 / 3e-79 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G037300 [exp] 442 / 7e-154 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.001G245200 [exp] 422 / 7e-146 AT2G29380 410 / 5e-142 highly ABA-induced PP2C gene 3 (.1) Potri.008G059200 [exp] 397 / 9e-137 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.010G199600 [exp] 392 / 2e-134 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.015G133900 [exp] 271 / 2e-87 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.015G018800 [exp] 253 / 9e-81 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.012G131800 [exp] 253 / 1e-80 AT5G51760 332 / 3e-111 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.003G044200 [exp] 244 / 4e-75 AT1G72770 576 / 0.0 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.006G164632 [exp] 239 / 7e-75 AT4G26080 300 / 1e-98 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Potri.006G224600 [exp] 241 / 3e-74 AT1G72770 503 / 1e-174 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10016493 pacid=23144851 polypeptide=Lus10016493 locus=Lus10016493.g ID=Lus10016493.BGIv1.0 annot-version=v1.0 ATGGAAATCCGCCGGTTTAAGGTCGTGCCGGGAGTGGTTGACGCATCGTCGGAGGACGATGACGGTGATACCAAGAGGCAGAAACTCGCGGGTTTCAAGG CTTCATTCGCGTGGAACAACAATGGAGGTGAAACCGCCGCTGTGGGAAATTGTGTTCCTCCGACGAATATGAGCTGCCGCGATAACGGACAGGAGATGAA GGAGAAACTTGTTATGAAGGTCGGGGATGTGAATCCGGTGACCGGCGAGTCTTTGGAACTGTCGTTGAGTCAGTCTCTGTTGGAGGCTGATAAGCAGCAT TGTTATCCTAAATATGGCGTCGCTTCCGTCTGCGGCAGGCGGAGAGATATGGAAGATGCAGTGGCGATTCATCCTTCGTTTTGTCTTAGAAACGGGGAGA GCATATCCGCGATGACCGAGCTTCACTACTTCGGCGTCTACGACGGACATGGTTGCTCTCATGTGGCGTCGAGATGTCGAGTGAGATTACACGAGCTGCT GAAGGAGGAGCTGCGTACGGAGTACTACAGCTCAGAGGAAGAGTCGGAGGAGTGGAAAGCGGCGATGGAGAAGAGCTTCGGCAGGATGGACAACGAAGTG AGTCTGTTGAATCAAGGTACAGCAGTTGCGACTTGCAGATGCGAGCTGCAGACGCCGGAATGCGACGCAGTTGGATCCACCGCCACCGTCGCCATCGTCT CTCCTGAAAAGATAATCGTCGCCAACTGCGGGGATTCTAGAGCCATCCTCTGCCGCAACGGGAAGCCGATCCCTCTGTCTACTGATCATAAGCCGGATCG CCCGGATGAACTGGACCGGATCCAAGCTGCCGGCGGACGAGTGATCTATTGGGACGGGCCAAGGGTGCTCGGAGTTCTCGCAATGTCGAGAGCAATCGGC GACAACTACCTGAAGCCATACGTGATCTCGGAGCCAGAGGTGACAATAACAGAACGATCCTCCGACGACGACTGCTTGATAATCGCCAGCGACGGTCTAT GGGACGTGGTGCCGAACGACACCGCGTGCGGCGTCGCGAGAATGTGTCTGAGAGGGAAAGGTAAGGGGAAGGCGGCGGGGCTGTGCGCGGCGGTAGAAGG CGAGGGAACTGCGGCGGCGGAAGCGGAGGATGGGAATAGCGGACGGTTAGGATGGGCGGAGAAGTCGGATAGAGCGTGCTCAGATGCGTCGATGCTGCTA ACGAAGCTGGCGCTGGCGAGGCACAGTACCGATAACGTGAGCGTTGTGGTGGTGGACCTCAGACGTGACACGTAG
AA sequence Show only first row Show all	>Lus10016493 pacid=23144851 polypeptide=Lus10016493 locus=Lus10016493.g ID=Lus10016493.BGIv1.0 annot-version=v1.0 MEIRRFKVVPGVVDASSEDDDGDTKRQKLAGFKASFAWNNNGGETAAVGNCVPPTNMSCRDNGQEMKEKLVMKVGDVNPVTGESLELSLSQSLLEADKQH CYPKYGVASVCGRRRDMEDAVAIHPSFCLRNGESISAMTELHYFGVYDGHGCSHVASRCRVRLHELLKEELRTEYYSSEEESEEWKAAMEKSFGRMDNEV SLLNQGTAVATCRCELQTPECDAVGSTATVAIVSPEKIIVANCGDSRAILCRNGKPIPLSTDHKPDRPDELDRIQAAGGRVIYWDGPRVLGVLAMSRAIG DNYLKPYVISEPEVTITERSSDDDCLIIASDGLWDVVPNDTACGVARMCLRGKGKGKAAGLCAAVEGEGTAAAEAEDGNSGRLGWAEKSDRACSDASMLL TKLALARHSTDNVSVVVVDLRRDT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10016493 [exp]	0	1
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10032391 [exp]	1.0	0.9183
AT1G07220			Arabidopsis thaliana protein o...		Lus10040665 [exp]	7.9	0.8296
AT5G06470			Glutaredoxin family protein (....		Lus10021255 [exp]	9.8	0.8163
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009103 [exp]	12.2	0.8149
AT1G72790			hydroxyproline-rich glycoprote...		Lus10008464 [exp]	19.6	0.8137
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10001783 [exp]	20.2	0.7770
AT1G28280			VQ motif-containing protein (....		Lus10041929 [exp]	20.6	0.8200
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10014568 [exp]	24.1	0.7971
AT5G53830			VQ motif-containing protein (....		Lus10005543 [exp]	25.8	0.8109
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004927 [exp]	27.7	0.8000

Compare expression of checked genes

Lus10016493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.