Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29260 101 / 3e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29330 89 / 9e-22 TRI tropinone reductase (.1) AT2G29340 87 / 3e-21 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G30670 87 / 4e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 87 / 4e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G06060 86 / 5e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29320 86 / 8e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 82 / 1e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G07450 82 / 2e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29310 82 / 3e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040730 [exp] 106 / 4e-28 AT2G29260 405 / 2e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 89 / 8e-22 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 84 / 4e-20 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 84 / 4e-20 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016494 [exp] 76 / 9e-17 AT5G06060 333 / 7e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 74 / 2e-16 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004985 [exp] 74 / 5e-16 AT2G29340 322 / 5e-110 NAD-dependent epimerase/dehydratase family protein (.1.2.3) Lus10001560 [exp] 74 / 5e-16 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 72 / 9e-16 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G244900 [exp] 98 / 5e-25 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 88 / 2e-21 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 83 / 1e-19 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G059100 [exp] 80 / 1e-18 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 80 / 1e-18 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 77 / 1e-17 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039300 [exp] 76 / 4e-17 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 75 / 9e-17 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G107001 [exp] 71 / 3e-16 AT2G29260 132 / 1e-38 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G199700 [exp] 68 / 2e-15 AT5G06060 145 / 1e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016500 pacid=23144844 polypeptide=Lus10016500 locus=Lus10016500.g ID=Lus10016500.BGIv1.0 annot-version=v1.0 ATGATGTCTATGGGGAGACTTTTTTTGATCTCATTTTGTTCATCATCATTCTTCTTACCGTGTCTCTTCTCCAAATCAGCAGTGCCTGTGACGTTTTCAG CGGCGAATGGGTCCTCGATGACTCGTACTCGTCAACAAACGACTGCTCGTCATCTTGTCCATTTCATCAAAAAAACATTCAATTGCCCCAAGTACGGTAG AACTGATAATCAATACTTGAAGTACGGGTGGCAACCGTCCCGATGCAACTTGCCTAGGAGGAAAGGACACCGAATTAAGTCCAATCGGATGACATTCAAA CCCACTATCCACACTAACCAATGTCAATATTACTCCAGAACTCCTCTTGGACGGTTAGGAGAGCCGAGAGAAGTGTCTTCTCTGGTTGCATTCCTTTGTA TGCCTGCATCGTCTTACATCACTGGGCAGATTATCTGCGTCGACGGAGGGATGTCTGTGAATGGTTTCTTCCCTAGTCATTCATAG
AA sequence Show only first row Show all	>Lus10016500 pacid=23144844 polypeptide=Lus10016500 locus=Lus10016500.g ID=Lus10016500.BGIv1.0 annot-version=v1.0 MMSMGRLFLISFCSSSFFLPCLFSKSAVPVTFSAANGSSMTRTRQQTTARHLVHFIKKTFNCPKYGRTDNQYLKYGWQPSRCNLPRRKGHRIKSNRMTFK PTIHTNQCQYYSRTPLGRLGEPREVSSLVAFLCMPASSYITGQIICVDGGMSVNGFFPSHS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10016500 [exp]	0	1
					Lus10024018 [exp]	2.2	0.6343
					Lus10018519 [exp]	9.6	0.6047
					Lus10033844 [exp]	16.9	0.6045
AT5G58840			Subtilase family protein (.1)		Lus10016483 [exp]	19.3	0.5764
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002613 [exp]	20.0	0.6011
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10025982 [exp]	28.8	0.5528
AT4G15780		ATVAMP724	vesicle-associated membrane pr...		Lus10037511 [exp]	37.4	0.5252
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010699 [exp]	43.6	0.5450
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10029484 [exp]	65.6	0.4545
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Lus10001043 [exp]	73.0	0.5363

Compare expression of checked genes

Lus10016500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.