Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53740 160 / 7e-52 Ribosomal protein L36e family protein (.1.2.3.4) AT5G02450 157 / 2e-50 Ribosomal protein L36e family protein (.1) AT2G37600 155 / 1e-49 Ribosomal protein L36e family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016466 [exp] 214 / 4e-73 AT3G53740 160 / 2e-52 Ribosomal protein L36e family protein (.1.2.3.4) Lus10024402 [exp] 213 / 2e-72 AT3G53740 161 / 9e-53 Ribosomal protein L36e family protein (.1.2.3.4) Lus10025342 [exp] 213 / 2e-72 AT3G53740 161 / 9e-53 Ribosomal protein L36e family protein (.1.2.3.4) Lus10040728 [exp] 212 / 5e-72 AT3G53740 159 / 5e-52 Ribosomal protein L36e family protein (.1.2.3.4) Lus10040766 [exp] 217 / 2e-70 AT3G53740 162 / 2e-49 Ribosomal protein L36e family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G066000 [exp] 181 / 6e-60 AT3G53740 173 / 2e-57 Ribosomal protein L36e family protein (.1.2.3.4) Potri.012G142600 [exp] 179 / 2e-59 AT3G53740 173 / 1e-57 Ribosomal protein L36e family protein (.1.2.3.4) Potri.015G145800 [exp] 179 / 2e-59 AT3G53740 173 / 1e-57 Ribosomal protein L36e family protein (.1.2.3.4) Potri.004G057000 [exp] 179 / 4e-59 AT2G37600 172 / 2e-57 Ribosomal protein L36e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01158 [flax] [poplar] Ribosomal_L36e Ribosomal protein L36e
Representative CDS sequence Show only first row Show all	>Lus10016501 pacid=23144794 polypeptide=Lus10016501 locus=Lus10016501.g ID=Lus10016501.BGIv1.0 annot-version=v1.0 ATGAGCCCAAACTCAATCCGGCCTGTATATTTCTTTCCGGCGTTTAAATCGGTAGGCAGCACAATAGAACGGTATATAATAAGAAAGAAGCAGAGTTTCA AGTTGCCCTTTGTATCTTCCAGCCGCACTAATCCAAGGGAAATGGCTCCTGCTCAGGCGAAGAGTGGTCTGTTCGTCGGACTGAACAAAGGACACATTGT CACCAAGCGCGATTTGCCGCCGCGTCCTTCCGATCGAAAGGGGAAAACTAGCAAGAGAGTGCATTTGGTGAGGAACCTTATCAGGGAAGTAGCTGGATTT GCTCCCTATGAGAAGAGAGTTATTGAGCTTTTGAAGGTGGGAAAGGATAAGAGAGCTCTGAAACTTTCAAAGAGAAAGCTTGGTACCCACAAGAGGGGCA AGAAGAAGAGAGAGGAGCTCGCCACCGCACTCCGCAAGATGAGGGCTGCAGGAGGAGGCGAGAAGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10016501 pacid=23144794 polypeptide=Lus10016501 locus=Lus10016501.g ID=Lus10016501.BGIv1.0 annot-version=v1.0 MSPNSIRPVYFFPAFKSVGSTIERYIIRKKQSFKLPFVSSSRTNPREMAPAQAKSGLFVGLNKGHIVTKRDLPPRPSDRKGKTSKRVHLVRNLIREVAGF APYEKRVIELLKVGKDKRALKLSKRKLGTHKRGKKKREELATALRKMRAAGGGEKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53740			Ribosomal protein L36e family ...		Lus10016501 [exp]	0	1
AT1G26880			Ribosomal protein L34e superfa...		Lus10036750 [exp]	1.4	0.9358
AT2G19740			Ribosomal protein L31e family ...		Lus10042028 [exp]	2.4	0.9281
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002027 [exp]	3.0	0.9238
AT3G23390			Zinc-binding ribosomal protein...		Lus10040983 [exp]	4.0	0.9233
AT3G44010			Ribosomal protein S14p/S29e fa...		Lus10039155 [exp]	4.4	0.8543
AT3G23390			Zinc-binding ribosomal protein...		Lus10013436 [exp]	5.0	0.9210
AT2G18196			Heavy metal transport/detoxifi...		Lus10010147 [exp]	5.3	0.8897
AT3G52040			unknown protein		Lus10039586 [exp]	5.7	0.8886
AT2G19730			Ribosomal L28e protein family ...		Lus10006869 [exp]	6.0	0.8647
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10021315 [exp]	6.9	0.8934

Compare expression of checked genes

Lus10016501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.