Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46780 452 / 5e-155 PTAC16 plastid transcriptionally active 16 (.1) AT3G18890 76 / 2e-14 AtTic62 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34460 50 / 1e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040768 [exp] 802 / 0 AT3G46780 540 / 0.0 plastid transcriptionally active 16 (.1) Lus10026321 [exp] 78 / 7e-15 AT3G18890 479 / 6e-163 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042346 [exp] 77 / 1e-14 AT3G18890 483 / 2e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004936 [exp] 50 / 2e-06 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040884 [exp] 47 / 2e-05 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G037000 [exp] 557 / 0 AT3G46780 503 / 2e-175 plastid transcriptionally active 16 (.1) Potri.001G244800 [exp] 526 / 0 AT3G46780 513 / 7e-179 plastid transcriptionally active 16 (.1) Potri.T124404 [exp] 83 / 1e-16 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 83 / 1e-16 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G150300 [exp] 82 / 1e-16 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G079600 [exp] 52 / 6e-07 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10016502 pacid=23144839 polypeptide=Lus10016502 locus=Lus10016502.g ID=Lus10016502.BGIv1.0 annot-version=v1.0 ATGGCTCCAACTCTCACTTCCAACTCATTCCACTTAACCACCCCATACCCACGTCCCACCTCCCTCCGCAGTAGCCACCGCCGCCTCGCCGTTTTCGCCA AGAAACCCAACAAGGAGAATGACAATTCAGAGTCCCCTGAATCTGCCGGGTCGGGGATTCAGAACCCTTTCCGCAATTTCAAATTCGGCAAGGTACCCGA TGCCAAGTCTTTGATTCCCGCGATGATCAGTAACCCTGCTGCAGGTTTGTCGTTTGGGAACCAGCGGAGGAAAGACCCCGGCACTGTCTTCGTCGCCGGC GCCACCGGTCAGGTTGGAGTTCGAATTGCTCGGACATTGCTGCGGGATGGGTTCAGTGTTAGAGCTGGCGTTGCGGAACTTGATGCTGCTCAGGAGCTTG CTCGTTTGGCTGCTGCTTATAAGATCATATCCAACGAGGAGTCCAAGCGGCTCAATGCTGTTGAATCCACTTTTGCCAGCGCTGAATCAATCGCCAAGGC AATCGGCAACGCTAGCAAAGTGGTGGTGACAATTGGACCATACGAGAACGGTCCAACATCCGAGGTTTCCACACTCGACGCATGGCAAGTAGTCCAGGCG GCTCAGCTAGCCGGAGTTGGCCATGTCGCCATTGTCTACGACGGAGGAAGCGCAGCTGGGGGTGCGTCTACTAACAACGTCCTAGACGGGTTCAAGATGT TCTTCAACAACCTCTTCTCGCAGTCTCAGCTGCTTAGCGTGCCCGAGTTCCTGCAGAAAGTGATCGAGACTGATGTCAGCTACACGTTCATAAACACGAG CTTGGCGGAGGATTATTCGCCGGAGAGCTCTTATAACGTTGTTGTCTCCGCCGAAGGGAGCTCAGGTCCAGACGACTACAAAGTTGCCAAGGCAAAGATA GCAACTTTGGTGGCAGATGTGTTCGCAAATACCGCCATAGCAGAAAACAAGGTGGTGGATGTCTTCACCAACCCATCAGCCCCTTTAAGATCTGTGGACG AGCTTTTCAGTGCAATCCCGGAAGATGGGAGAAGGAAAGCATACGCAGAGGCGCTCGAGAAGGCTAAAGCCGAGGAAGAGGCGAAAAGCGCAGCAGAGAA AGCTCGAGAAGCCGCTCTGACAGCTAAGAAGTTAGAGCAAGAAGTGAAGAAGCTATCCGATCAGGAAGCGAAAGCCACAAGCCTAGCAAACGAAGCGCAG AAGAAGGCGGAAGCTGCAGGGGTCTCTGTAGGGGACATGGTGGAAAAAGCTAAAGGCTTTGGTAGTAGTGCCGCAGCAGGGTTCTCATGGGAGAAGCTGA GTTCCCAGCTAACAACAGCAGTTCAAAGTGCTGGAGCAGAGATTCCTAAAGTGCAGGTTGCTACCGTGAGGGGACAGGCAAAGGCCCGTTCTTTGCCTGT CCAGAAAGCTGTTGTGAAACCGCCTATTGTTCCGAAATTGAAGCCCAAGAAGGCGTCGGTGCAGCCGGAACCTGTGCAGGCAGAGGAGAAGAAGGAAGTG AGGAAGTTGTTTGGTGGGCTATTTAAGCAGGAGACCATATACATCGACGACGATTGA
AA sequence Show only first row Show all	>Lus10016502 pacid=23144839 polypeptide=Lus10016502 locus=Lus10016502.g ID=Lus10016502.BGIv1.0 annot-version=v1.0 MAPTLTSNSFHLTTPYPRPTSLRSSHRRLAVFAKKPNKENDNSESPESAGSGIQNPFRNFKFGKVPDAKSLIPAMISNPAAGLSFGNQRRKDPGTVFVAG ATGQVGVRIARTLLRDGFSVRAGVAELDAAQELARLAAAYKIISNEESKRLNAVESTFASAESIAKAIGNASKVVVTIGPYENGPTSEVSTLDAWQVVQA AQLAGVGHVAIVYDGGSAAGGASTNNVLDGFKMFFNNLFSQSQLLSVPEFLQKVIETDVSYTFINTSLAEDYSPESSYNVVVSAEGSSGPDDYKVAKAKI ATLVADVFANTAIAENKVVDVFTNPSAPLRSVDELFSAIPEDGRRKAYAEALEKAKAEEEAKSAAEKAREAALTAKKLEQEVKKLSDQEAKATSLANEAQ KKAEAAGVSVGDMVEKAKGFGSSAAAGFSWEKLSSQLTTAVQSAGAEIPKVQVATVRGQAKARSLPVQKAVVKPPIVPKLKPKKASVQPEPVQAEEKKEV RKLFGGLFKQETIYIDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10016502 [exp]	0	1
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Lus10039912 [exp]	1.4	0.9620
AT4G01150			unknown protein		Lus10010132 [exp]	3.0	0.9585
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10043342 [exp]	3.5	0.9512
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10026241 [exp]	4.2	0.9599
AT1G51100			unknown protein		Lus10011316 [exp]	7.2	0.9395
AT4G28740			unknown protein		Lus10011914 [exp]	7.4	0.9218
AT1G19740			ATP-dependent protease La (LON...		Lus10006131 [exp]	7.7	0.9381
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10039739 [exp]	7.7	0.9580
AT3G51510			unknown protein		Lus10034765 [exp]	9.9	0.9246
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10018521 [exp]	10.0	0.9524

Compare expression of checked genes

Lus10016502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.