Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07470 307 / 4e-101 Transcription factor IIA, alpha/beta subunit (.1) AT1G07480 304 / 5e-100 Transcription factor IIA, alpha/beta subunit (.1.2) AT5G59230 59 / 7e-10 transcription factor-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040769 [exp] 570 / 0 AT1G07470 354 / 7e-121 Transcription factor IIA, alpha/beta subunit (.1) Lus10001563 [exp] 346 / 4e-117 AT1G07480 255 / 9e-83 Transcription factor IIA, alpha/beta subunit (.1.2) Lus10004981 [exp] 262 / 1e-84 AT1G07480 193 / 4e-59 Transcription factor IIA, alpha/beta subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G244204 [exp] 405 / 7e-139 AT1G07470 343 / 4e-116 Transcription factor IIA, alpha/beta subunit (.1) Potri.009G036700 [exp] 404 / 1e-138 AT1G07470 358 / 1e-121 Transcription factor IIA, alpha/beta subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03153 [flax] [poplar] TFIIA Transcription factor IIA, alpha/beta subunit
Representative CDS sequence Show only first row Show all	>Lus10016503 pacid=23144909 polypeptide=Lus10016503 locus=Lus10016503.g ID=Lus10016503.BGIv1.0 annot-version=v1.0 ATGCAAACCTATTTATATTCCACTCTTTATTCTCTTTTTCTCGTCCGTCTCCGATCTCCCTCGTCGCTCTTCTCTCACTCCGCAATCCACACACCTCCAT CCTTCTCCGGCGAACGTCCTCTGGAAAATCGAATATCCTCCTTCAGCCCGCTTGAATTTCGCTCTTTGGTTCGAGGGGGGCGGGGGGTAATATGGCCGCA TCCGCCACTACTAGCACCGTCTACATCCAGGTCATCGACGACGTCGTCAACAAGGGAAGACGTCGTCAACAAGGTCCGCGAGGAGTTCATCAACAATGGC GGCCCCGGCGAGTCCGTGCTTACTGAACTCCAAGGGATTTGGGAGATGAAGATGATGCAAGCGGGCGTTATATTGGGACCGATAGATCGCTCTGCTTCTC AAAAGCAGGCGGCTGGTGGCCCTACTCCGGTCCACGACCTTAATGTACCATACGAAGGCACCGAAGAGTACGAGACTCCCACAGCTGAAATGCTCTTCAC TCCTACACCAATGCTGCAGACTCCACTACCTGCACATACCCCTTTACCAGGAAATGCCCAGACACCCTTGCCTGGAACTGCAGACAACTCCTCCATGTAT AACATTCCTACGGGAAATAGTAGCGAGTATCCTACTCCTATTAGTGAGATTGGTGGTAGTAATGGCCATACAGAGACTAAACCTGGTCGTCCTAGCCCGT ACATGCAACCTCCTTCGCCTTGGATGCAACAAAGGCCTGCAATTGGTGTTGATGTTAATGTTGCTTATGAGGAAAGTCGAGATGAAGCTGACAGAGGAGC CCCTAATAATCCCCTGACTCAGGACTTCTTCACGAATTCTTCTGGAAAGCGGAAGCGTGATGATTTTCCTCCACCTTACAATAGTGGCGGGTACATACCC CAGCAAGATGGAGCCGGGGATTTCATCTTTGAGATTTCTCAGGGAGGAACTGGGAAGATACCTCAAGTGGATGGTCCCGCTCCAGATCAATATGATGATG ATATTCTTTCTACTCCCAACATATACAATTATCAAGGAGCAGCGAATGAAGAATACAACGTAAACACACCAGCTGCCAATGAACTGCAGGCCAATACTCC TGCTTTGGTACCACAAAACGATCCAGATGATGATGACGAGGATGAGCCATTGAATGAGGATGACGATGATGAGGAGGACTTGGATGACGACGATGATCGT GAGGAGCTGAACACACAGCATCTGGTTCTGGCTCAGTTTGACAAGGTAACCCGTACCAAGAGCAGATGGAAGTGCACTCTTAAAGATGGTATTATGCATA TAAACAACAAGGACATCCTCTTCAACAAGGTGAATTCCGATATAACTTTGTCGACAGCGATTCTCAGTTCTTATCTCTAA
AA sequence Show only first row Show all	>Lus10016503 pacid=23144909 polypeptide=Lus10016503 locus=Lus10016503.g ID=Lus10016503.BGIv1.0 annot-version=v1.0 MQTYLYSTLYSLFLVRLRSPSSLFSHSAIHTPPSFSGERPLENRISSFSPLEFRSLVRGGRGVIWPHPPLLAPSTSRSSTTSSTREDVVNKVREEFINNG GPGESVLTELQGIWEMKMMQAGVILGPIDRSASQKQAAGGPTPVHDLNVPYEGTEEYETPTAEMLFTPTPMLQTPLPAHTPLPGNAQTPLPGTADNSSMY NIPTGNSSEYPTPISEIGGSNGHTETKPGRPSPYMQPPSPWMQQRPAIGVDVNVAYEESRDEADRGAPNNPLTQDFFTNSSGKRKRDDFPPPYNSGGYIP QQDGAGDFIFEISQGGTGKIPQVDGPAPDQYDDDILSTPNIYNYQGAANEEYNVNTPAANELQANTPALVPQNDPDDDDEDEPLNEDDDDEEDLDDDDDR EELNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKVNSDITLSTAILSSYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07470			Transcription factor IIA, alph...		Lus10016503 [exp]	0	1
AT5G22120			unknown protein		Lus10008366 [exp]	1.4	0.8559
AT4G21660			proline-rich spliceosome-assoc...		Lus10011207 [exp]	8.3	0.8196
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10023814 [exp]	32.7	0.8118
AT1G06060			LisH and RanBPM domains contai...		Lus10004152 [exp]	33.8	0.7143
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10028934 [exp]	35.9	0.7689
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10042930 [exp]	40.8	0.7975
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10019235 [exp]	41.9	0.8070
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10021823 [exp]	45.7	0.8052
AT3G46210			Ribosomal protein S5 domain 2-...		Lus10009221 [exp]	48.0	0.7987
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10030045 [exp]	49.6	0.8045

Compare expression of checked genes

Lus10016503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.