Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59250 682 / 0 Major facilitator superfamily protein (.1) AT5G17010 488 / 1e-168 Major facilitator superfamily protein (.1.2.3.4) AT3G03090 476 / 4e-164 ATVGT1 vacuolar glucose transporter 1 (.1) AT2G20780 177 / 1e-48 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 176 / 2e-48 ATINT1 inositol transporter 1 (.1) AT3G18830 171 / 1e-46 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 168 / 1e-45 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G18480 166 / 6e-45 AtPLT3 Major facilitator superfamily protein (.1) AT2G16130 166 / 8e-45 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT5G27360 164 / 3e-44 SFP2 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009573 [exp] 469 / 2e-159 AT5G17010 691 / 0.0 Major facilitator superfamily protein (.1.2.3.4) Lus10040772 [exp] 434 / 2e-151 AT5G59250 387 / 4e-133 Major facilitator superfamily protein (.1) Lus10040771 [exp] 315 / 4e-105 AT5G59250 180 / 3e-53 Major facilitator superfamily protein (.1) Lus10018581 [exp] 185 / 9e-52 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10025565 [exp] 183 / 5e-51 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10023640 [exp] 179 / 1e-49 AT3G18830 516 / 7e-180 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10031637 [exp] 177 / 1e-48 AT2G20780 693 / 0.0 Major facilitator superfamily protein (.1) Lus10027026 [exp] 176 / 2e-48 AT2G43330 769 / 0.0 inositol transporter 1 (.1) Lus10033702 [exp] 174 / 2e-47 AT2G20780 691 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G244100 [exp] 671 / 0 AT5G59250 598 / 0.0 Major facilitator superfamily protein (.1) Potri.019G055600 [exp] 514 / 6e-179 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4) Potri.013G135200 [exp] 185 / 1e-51 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.017G032200 [exp] 181 / 2e-50 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 168 / 1e-45 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.009G113600 [exp] 166 / 6e-45 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 166 / 1e-44 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 164 / 2e-44 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 163 / 5e-44 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G039100 [exp] 161 / 3e-43 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10016505 pacid=23144890 polypeptide=Lus10016505 locus=Lus10016505.g ID=Lus10016505.BGIv1.0 annot-version=v1.0 ATGGCTAACAGTGCCTTACTCTCATCCTCTTCATTTCAACTCCCCACTCCCACAAAACCATTAACCCGCACTTCTCCATTCCTCTGCAATTCCATCACCA ACAATGCCAACCACCACCAAACCCCAATTTCACTCACTTGCTTACATTCCAAGCAGAACTCAAAGCTTCCCTTTTCGCTCCAAAAACCATCGCTGTTTGC CTCCCGATGTCACAAGCCGCCGAGGCTCAACGATAAGTGTTCTGCCGCTCGAGAGGACGCAGACTCGCTTGTGAATCACGATGATTCCTTTTCCTGGTCA TCCGTTATCTTGCCGTTTGTGTTCCCAGCATTGGGAGGATTGCTATTTGGGTATGACATTGGCGCCACTTCTGGTGCTACTATATCAATACAGTCACCTG ATCTAAGTGGGACAACTTGGTTCAGTCTTTCAGCTGTGCAGCTTGGCCTTGTGGTCAGTGGTTCTCTTTACGGAGCACTTCTTGGTTCCATCCTTGTTTA TCCCACTGCAGATTTCCTGGGGAGGAGGCGCGAACTAATAATAGCAGCAGGGCTATATCTGCTCGGAGGAATCACCACAGCTTATGCACCAGGCCTCGGC GTTCTTTTGGCTGGACGTCTTCTATATGGCCTTGGAATTGGCATGGCTATGCATGGTGCTCCTCTCTACATAGCTGAAACATGTCCGTCACAGATTCGCG GAACTCTAATCTCATTGAAGGAGCTTTTCATAGTTTTGGGAATTTTGCTGGGTTACTTTGTGGGTAGCTTTCAAATCGATGCAGTTGGAGGGTGGCGTTA CATGTACGGTCTGAGCGCCCCTTTGGCTTTGCTGATGGGATTTGGAATGTGGAGTCTTCCATCCTCTCCACGCTGGTTGCTTCTTAGGGCTGTTCAGGGT CAAGCACCTTTACAAGAGTACAAGGAGAAGGCCATTTTCGCACTTAGCAGACTCCGGGGTCGGCCTTTAGGTGATAAAGTTTCCGAAACGGAAATAGAGA GCAACCTTAGCTCACTCAAGTCTAGCTATGATGAGGAATCACAGGGGAATCTCCTAGAAGTGTTTCAAGGACCGAGTCTGAAAGCCTTCATTATTGGTGG CGGCTTGGTGCTTTTTCAGCAGATAACTGGGCAACCAAGTGTTCTTTATTACGCAGGCTCGATTCTTCAGACTGCTGGTTTCTCCGCGGCTGCTGATGCT ACACGAGTTTCTGTTGTCATCGGGGTGTTTAAGTTTCTGATGACAGGGGTTGCCGTCCTAAAAGTAGATGATCTCGGACGAAGACCTTTGCTGATTGCCG GCGTCAGTGGCATTGTCCTTTCCTTGTTTCTGCTGTCTGCTTATTACAAATTTCTCGGAGGGTTCCCCCTAGTCGCTGTTGCAGCTTTGCTTCTATATGT GTCGTTCGGGCCAATCAGTTGGCTAATGGTGTCCGAAATCTTCCCTCTTCGTACCAGGGGGAAGGGAATCAGTCTTGCAGTTCTTACTAACTTCGGCTCG AACGCAATTGTAACATTTGCATTCTCACCATTGAAGGAGTTGCTTGGCGCTGAGAATCTTTTCCTTCTTTTCGGTGCAATAGCTGTCGTGGCACTCTTGT TCACGATCACGATCGTCCCAGAGACTAAAGGCTTGAGCTTGGAAGAAATCGAGTCAAAAGTCTTGAAGTGA
AA sequence Show only first row Show all	>Lus10016505 pacid=23144890 polypeptide=Lus10016505 locus=Lus10016505.g ID=Lus10016505.BGIv1.0 annot-version=v1.0 MANSALLSSSSFQLPTPTKPLTRTSPFLCNSITNNANHHQTPISLTCLHSKQNSKLPFSLQKPSLFASRCHKPPRLNDKCSAAREDADSLVNHDDSFSWS SVILPFVFPALGGLLFGYDIGATSGATISIQSPDLSGTTWFSLSAVQLGLVVSGSLYGALLGSILVYPTADFLGRRRELIIAAGLYLLGGITTAYAPGLG VLLAGRLLYGLGIGMAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIDAVGGWRYMYGLSAPLALLMGFGMWSLPSSPRWLLLRAVQG QAPLQEYKEKAIFALSRLRGRPLGDKVSETEIESNLSSLKSSYDEESQGNLLEVFQGPSLKAFIIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADA TRVSVVIGVFKFLMTGVAVLKVDDLGRRPLLIAGVSGIVLSLFLLSAYYKFLGGFPLVAVAALLLYVSFGPISWLMVSEIFPLRTRGKGISLAVLTNFGS NAIVTFAFSPLKELLGAENLFLLFGAIAVVALLFTITIVPETKGLSLEEIESKVLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59250			Major facilitator superfamily ...		Lus10016505 [exp]	0	1
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10015504 [exp]	2.4	0.9030
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10008359 [exp]	2.8	0.8796
AT3G53470			unknown protein		Lus10014016 [exp]	3.9	0.9147
AT1G13820			alpha/beta-Hydrolases superfam...		Lus10036913 [exp]	7.1	0.8970
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10015399 [exp]	9.8	0.8869
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10030949 [exp]	13.0	0.8701
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10013978 [exp]	14.5	0.8809
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10029823 [exp]	17.3	0.8857
AT2G23820			Metal-dependent phosphohydrola...		Lus10015497 [exp]	17.7	0.8622
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10014399 [exp]	18.0	0.8669

Compare expression of checked genes

Lus10016505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.