Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 561 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 555 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 546 / 0 RLK receptor lectin kinase (.1) AT3G45440 544 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 543 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60300 539 / 0 LecRK-I.9 lectin receptor kinase I.9, Concanavalin A-like lectin protein kinase family protein (.1.2.3) AT5G60280 533 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 532 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 524 / 9e-179 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 523 / 2e-178 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040773 [exp] 1165 / 0 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 719 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 716 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 678 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 675 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 593 / 0 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 593 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 587 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 582 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G036300 [exp] 671 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 669 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 665 / 0 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 662 / 0 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035400 [exp] 660 / 0 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 658 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035701 [exp] 630 / 0 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 604 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 599 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.009G035601 [exp] 598 / 0 AT3G45430 498 / 3e-169 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10016506 pacid=23144828 polypeptide=Lus10016506 locus=Lus10016506.g ID=Lus10016506.BGIv1.0 annot-version=v1.0 ATGGCGTTCATCCAATTCCTCCTCCTCCTAATCTCCACACTTCCGTTCACCAAACCAGAACAGTTCATCTTCAGCGGCTTCAACAACAATGGAACCAACA ACCTCAAGCTCAACCTCGACGGAGAAGCAGCAGAGATTCAACCCACCGGCCTCCTCCGTCTCACAGATTCATCACCTCTCCAAATGGGCCACGCTTTCTA CCCTTCACCAATCAACTTCCCAAATTCCTCTTCCTTATCCTTCTCCACAAACTTCATCTTCGCCATGCTCCCGCAGTCCCCAAACCTAGGAGGCCACGGA TTAGCATTCTTCCTATCCCCCACAGTTGATTTCACTCAGGCAGTCGCCAGCCAACACTTGGGGCTATTCAACGCCACAACCAACGGCGTTGCCACCAACC ACGTGTTAGCAATCGAGTTTGACGCCATGAGGAGTCCTGAGTTTCAGGACATTGACAACAACCATGTAGGAGTTGATATCAACAGCTTGATATCCATTGA CTCTGCTCCTGCTTCTTTTATAAACCCACCAGATGGTAAAAATCTGACCTTGCAGATGCTTAGTGGGAATCCTATCAGGGTTTGGATTGATTATAATGAT ACTTTGAAGCTGATTAATATTACTATAGCTCCGGTTAGTGGTTTAAGGCCGGAAAGGTCGTTACTTTCAACGAATGTTGATCTTGGTGATGTGCTTTCTG AGTCTATGTATGTTGGGTTTTCTGCTGCAACTAGTACTGTGACTAGTGAGCATTACATTCTTGGGTGGAGCTTTAGTAAAGGTGGGAAGGCTGAGGAGCT TGATGTCTCTAAGCTTCCAAAGCTTCCACCTTTGAACAAGGGAAAGAGGAAAAGAGTTGGGTGGATGATCATAGTTTTTCCTGTGCTGGGTTTGGTTCTG TTGGGTTTGGTTTGGGGGAGTTTGGTTTGTTGGCAGAGGAGGAAGTTGTATGCTGAAGTGTGTGAAGAATGGGAGAAGGAGTATAATCCTCAGAGATTCA CTTACAAGAATCTTTATTTAGCAACGGGCGGTTTCAAGGAGAAGCAGTTTCTCGGAGTCGGAGGGTTCGGGAAAGTTTACAAGGGAGTTCTTCCATCTTC TGGAATGGAGGTTGCGGTGAAGAGAGTCAACCACGATTCGAGGCAAGGGATGAAGGAATTCGTGGCGGAGATCATCAGCATTGGAAGGTTAAGGCATAGG AACTTGGTGCAGTTACTTGGATACTGTAGGAGGAAAGGTGAACTCTTGCTGGTGTATGATTACATGCCTAATGGCAGCCTTGACAAGTTGCTGTTTTCTT CAAGTGACGATGAAAACTCGAAAATGAGCCTAAATTGGCCTCAGAGGCAGAGGATCATCAGAGGGGTGGCCTCGGCGCTTCTGTATCTCCACGAGGAATG GGAGCAAGTTGTGATTCACAGGGATATCAAAGCAAGTAATGTGCTTTTGGATGCTGATATGAATGGAAGATTAGGAGATTTCGGTCTTGCTAGATTGCAT GACCACGGTACGAATTCTCATACCACTCAAGTGGCAGGAACTGTTGGTTACTTGGCTCCTGAACTTACTAGACTAGGAAAGGCCACAACTAGCACTGATG TGTTTGCATTTGGGGTGTTCATGTTGGAGGTGGTCTGCGGGAGACGGCCAGTGGACATGGAAGCGGTTTCCGATGAAGTTGTTCTGGTGGATTGGGTGGT TAAGTGTTGGCAAGGAGGGGACATTCTCAGTGCAGTGGATCCTAGGTTGCAGGAAGGGAGTTATGACAGAGAGGAAATGGAGTTGGTCATGAGATTAGGG CTTCTGTGTTCACATACTGTGTCGGCATTAAGGCCTAGTATGAGGAAAGCGATGCAGTACCTGGATGGCGATACAACATTGCCCGAGATCTCGCTGGAAA GTGCTGGAATTGGGAACTTCCCTTGCTACAGTGAAAGATCCGATCTATTCTTGTCGAATTTTACTGCTAGTAGAGCTTCCATGAATTCCTTCTGCAGTCA GGATTCAATCATCACAACGGGTCGTTAG
AA sequence Show only first row Show all	>Lus10016506 pacid=23144828 polypeptide=Lus10016506 locus=Lus10016506.g ID=Lus10016506.BGIv1.0 annot-version=v1.0 MAFIQFLLLLISTLPFTKPEQFIFSGFNNNGTNNLKLNLDGEAAEIQPTGLLRLTDSSPLQMGHAFYPSPINFPNSSSLSFSTNFIFAMLPQSPNLGGHG LAFFLSPTVDFTQAVASQHLGLFNATTNGVATNHVLAIEFDAMRSPEFQDIDNNHVGVDINSLISIDSAPASFINPPDGKNLTLQMLSGNPIRVWIDYND TLKLINITIAPVSGLRPERSLLSTNVDLGDVLSESMYVGFSAATSTVTSEHYILGWSFSKGGKAEELDVSKLPKLPPLNKGKRKRVGWMIIVFPVLGLVL LGLVWGSLVCWQRRKLYAEVCEEWEKEYNPQRFTYKNLYLATGGFKEKQFLGVGGFGKVYKGVLPSSGMEVAVKRVNHDSRQGMKEFVAEIISIGRLRHR NLVQLLGYCRRKGELLLVYDYMPNGSLDKLLFSSSDDENSKMSLNWPQRQRIIRGVASALLYLHEEWEQVVIHRDIKASNVLLDADMNGRLGDFGLARLH DHGTNSHTTQVAGTVGYLAPELTRLGKATTSTDVFAFGVFMLEVVCGRRPVDMEAVSDEVVLVDWVVKCWQGGDILSAVDPRLQEGSYDREEMELVMRLG LLCSHTVSALRPSMRKAMQYLDGDTTLPEISLESAGIGNFPCYSERSDLFLSNFTASRASMNSFCSQDSIITTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53810			Concanavalin A-like lectin pro...		Lus10016506 [exp]	0	1
AT3G20600		NDR1	non race-specific disease resi...		Lus10043067 [exp]	2.8	0.9182
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10040069 [exp]	3.2	0.9270
AT5G60750			CAAX amino terminal protease f...		Lus10024708 [exp]	6.0	0.9147
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001902 [exp]	6.0	0.9124
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025974 [exp]	7.7	0.9055
AT2G23780			RING/U-box superfamily protein...		Lus10016796 [exp]	8.5	0.8885
AT2G33490			hydroxyproline-rich glycoprote...		Lus10035172 [exp]	9.5	0.8703
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10014163 [exp]	10.9	0.8989
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	11.0	0.9109
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10018839 [exp]	12.2	0.8753

Compare expression of checked genes

Lus10016506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.