Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 691 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 662 / 0 RLK receptor lectin kinase (.1) AT4G02410 657 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 636 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60300 632 / 0 LecRK-I.9 lectin receptor kinase I.9, Concanavalin A-like lectin protein kinase family protein (.1.2.3) AT3G45410 629 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60280 625 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45440 623 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 619 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 619 / 0 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040774 [exp] 1235 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 1004 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 1001 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 793 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 778 / 0 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 683 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 681 / 0 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 676 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 657 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G035500 [exp] 767 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 766 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 760 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035400 [exp] 760 / 0 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 743 / 0 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 743 / 0 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088900 [exp] 734 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 728 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 725 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 723 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10016507 pacid=23144884 polypeptide=Lus10016507 locus=Lus10016507.g ID=Lus10016507.BGIv1.0 annot-version=v1.0 ATGGCTGCTACTGTCAGGAAGAGATTCCTGCTCCATACACTTCTCTTCCATTTCATTTTCGCCATCTGCAATTCCCAATCTCCTCCTGCAACTCAGTTCA CCTTCAACGGATTCAATCGGGCAAACCTGATATTCGACAGCCAGGCCAAAATCCTCCCCAACGGTTTACTCCAACTGACGAATTTCACGGAGCTCGTCAT CGGCCATGCCTTCTACCACCAGCCGTTCAAATTCACTCCTTCTGAATCGCTTTCCTTCTCCACGACTTTCGTCTTCGCTATGGTTCCGCAGTCCGCCAAC ACCGGCGGCCACGGTATTGCCTTCACGATATCTCCGACCACTGATTTTAGTCAAGCAGTCGCCAGCCAGCACTTGGGGTTGTTCAATTCAACAAACTTGG GGAATTCTTCCAACCACGTGGTTGCAGTCGAGCTCGATGCTATGCGTAGCCCGGAGTTCCAGGATATCGACGACAACCACGTCGGCGTCGACCTCAACAC GTTGATTTCGACCGTCTCCGCCACTGTCTCCTACGTCTCCGACCAGGACGGCCGTAACAGAACGCTCCGGTTGCTGTCAGGTGACCGGATGCAGGTCTGG ATCCGGTACGATGACTCAAACAAGAGGATGAACATCACCGTCGCTCCGTTTGGGGTTTCTAAACCTAGACGCCCTCTGATATCGACTCCGATCGATTTGT CGTCTTACCTCGTGGAATCGATGTACGTCGGATTCTCTTCCTCCACGAGCACTGTCACCAGCGAGCAGTACATACTGGGATGGAGCTTCAGCAAAGGAGA AAGAGAAGCGCCGTCGTTAGATCTCCGTTCTCTGCCAGTTTCTCCACGGCCGAAGAAACAGAGCGAAAAATTAGGAACGGTTGCGACGATCGTTCTAATA ATGTTAGCAATCTCCCTAACCGGAATCGCCATAGCAGCTTACATCCTCCGATTGAGAAGATACAGAGAGCTGACTGAAGATTGGGAGAAAGAATACAATC CGCAGAGACTCTGTTACAAAGATCTGTACAGAGCGACTCATGGATTCAAGGAGAAGGAAGTTCTCGGATCGGGAGGATTCGGAAAAGTCTACAGAGGTAT TTTACCTACCTCCAAAATCGAAGTAGCAGTGAAGCGAATCTCTCACGATTCGAGGCAAGGGATGAAGGAATTCGTCGCCGAGATCGTCAGTATGGGGAGA TTACGGCATAGAAACTTGGTTCATCTTTTAGGTTACTGCCGAAGGAAAGGCGAATTACTTCTGGTCTACGATTACATGCCTAATGGAAGTTTAGACAAAT ACCTCTTCGATCCAGCGACAATGGAGACAACGCTGAACTGGCAGCAGAGATTCAACATCCTGAGAGGAGTAGCTTCGGGACTGCTGTATCTGCACGAAGA ATGGGAGCAGATCGTCCTCCACCGTGACATCAAAGCAAGCAACATTTTACTCGACGCTGATCTGAACGGCCGATTGGGAGATTTCGGACTCGCCAGGCTA TACGACCACGGCACGAATCCCCAAACAACTCACGTGGTGGGGACCGTCGGATACCTAGCTCCGGAGCTCTCCCGACTAGGGAAGGCGACAACGGCCACCG ACGTCTACGCGTTCGGAGTGTTTATGCTGGAAGTAGCGTGCGGGAAGAGGCCGATCGACACGACGGCGATCCCCGAAGAGATGATACTAGTGGATTGGGT GATCGATTGTTGGAAGAGAGGCGAGATCTTGGAAGCAAGCGATCCGAAATTGGGAGGGGACTATTCGAAGGAAGAGATGGAGATGGTGATGAAAATGGGG CTTTTGTGCTCTCACAATATGGAGGCGTTTCGGCCGAGTATGAGGCAGGTGATGCAGCATCTCGACGGAGATTCGAACTTGCCGGAGATTCCGGTTGAGA GCTCCGGGATCGGAGCGTTCTCAATCGGAGGGAGGGAGACGGCGGAGTTTGTGATGTCGTTTCCTTCTTCCGTTACTACGGTTAATACTATGTCGAGTAC TGATTCTATTCTTCATTCCGGCCGGTAG
AA sequence Show only first row Show all	>Lus10016507 pacid=23144884 polypeptide=Lus10016507 locus=Lus10016507.g ID=Lus10016507.BGIv1.0 annot-version=v1.0 MAATVRKRFLLHTLLFHFIFAICNSQSPPATQFTFNGFNRANLIFDSQAKILPNGLLQLTNFTELVIGHAFYHQPFKFTPSESLSFSTTFVFAMVPQSAN TGGHGIAFTISPTTDFSQAVASQHLGLFNSTNLGNSSNHVVAVELDAMRSPEFQDIDDNHVGVDLNTLISTVSATVSYVSDQDGRNRTLRLLSGDRMQVW IRYDDSNKRMNITVAPFGVSKPRRPLISTPIDLSSYLVESMYVGFSSSTSTVTSEQYILGWSFSKGEREAPSLDLRSLPVSPRPKKQSEKLGTVATIVLI MLAISLTGIAIAAYILRLRRYRELTEDWEKEYNPQRLCYKDLYRATHGFKEKEVLGSGGFGKVYRGILPTSKIEVAVKRISHDSRQGMKEFVAEIVSMGR LRHRNLVHLLGYCRRKGELLLVYDYMPNGSLDKYLFDPATMETTLNWQQRFNILRGVASGLLYLHEEWEQIVLHRDIKASNILLDADLNGRLGDFGLARL YDHGTNPQTTHVVGTVGYLAPELSRLGKATTATDVYAFGVFMLEVACGKRPIDTTAIPEEMILVDWVIDCWKRGEILEASDPKLGGDYSKEEMEMVMKMG LLCSHNMEAFRPSMRQVMQHLDGDSNLPEIPVESSGIGAFSIGGRETAEFVMSFPSSVTTVNTMSSTDSILHSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53810			Concanavalin A-like lectin pro...		Lus10016507 [exp]	0	1
AT3G53810			Concanavalin A-like lectin pro...		Lus10040774 [exp]	1.0	0.9311
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10040872 [exp]	2.0	0.9204
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Lus10028174 [exp]	3.0	0.8906
AT4G19390			Uncharacterised protein family...		Lus10018793 [exp]	6.2	0.8482
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10008004 [exp]	6.7	0.8727
AT4G27610			unknown protein		Lus10043458 [exp]	7.7	0.8718
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001052 [exp]	8.7	0.8465
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027415 [exp]	8.9	0.8384
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10007231 [exp]	10.4	0.8828
AT5G43260			chaperone protein dnaJ-related...		Lus10037022 [exp]	11.4	0.8558

Compare expression of checked genes

Lus10016507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.