Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46740 1178 / 0 MAR1, TOC75-III, TOC75 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) AT4G09080 488 / 8e-167 TOC75-IV, ATTOC75-IV translocon at the outer envelope membrane of chloroplasts 75-IV, TRANSLOCON OUTER MEMBRANE COMPLEX 75-IV, Outer membrane OMP85 family protein (.1) AT1G35860 449 / 2e-151 TOC75-I translocon outer membrane complex 75-I (.1) AT5G19620 120 / 5e-28 TOC75-V, EMB213, TOC75, ATOEP80, OEP80 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) AT3G44160 76 / 2e-14 Outer membrane OMP85 family protein (.1) AT3G48620 51 / 2e-06 Outer membrane OMP85 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001566 [exp] 1260 / 0 AT3G46740 1210 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10004978 [exp] 1136 / 0 AT3G46740 1117 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10040775 [exp] 429 / 5e-144 AT3G46740 471 / 7e-161 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10031839 [exp] 108 / 7e-24 AT5G19620 1030 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Lus10031272 [exp] 105 / 6e-23 AT5G19620 1018 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Lus10013360 [exp] 47 / 5e-05 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10004104 [exp] 45 / 0.0002 AT3G44160 566 / 0.0 Outer membrane OMP85 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G072800 [exp] 1216 / 0 AT3G46740 1289 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Potri.003G158100 [exp] 1207 / 0 AT3G46740 1274 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Potri.003G204900 [exp] 125 / 2e-29 AT5G19620 892 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.001G019000 [exp] 123 / 6e-29 AT5G19620 936 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.009G017100 [exp] 78 / 3e-15 AT3G44160 598 / 0.0 Outer membrane OMP85 family protein (.1) Potri.001G215500 [exp] 74 / 9e-14 AT3G44160 581 / 0.0 Outer membrane OMP85 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0191 [flax] [poplar] POTRA PF07244 [flax] [poplar] POTRA Surface antigen variable number repeat CL0193 [flax] [poplar] MBB PF01103 [flax] [poplar] Omp85 Omp85 superfamily domain
Representative CDS sequence Show only first row Show all	>Lus10016508 pacid=23144852 polypeptide=Lus10016508 locus=Lus10016508.g ID=Lus10016508.BGIv1.0 annot-version=v1.0 ATGTCCTCCTTTGCCGGTTCCGCCAACTTCCTCGTCAAGTTACCGATCACCTCCCGCCGCAATTCACGCACCGCCGCTCCTTCTCCTTCTCCACGCTCCG TCTCGTTTAAATGCTACTTTACTCCTTCATCTTCATCATCATCATCATCATCCTCTCTGCTAAACCCTAAACCCTCCGTTTCCAAAGGTAAGCGCAATTC TCTCCTCACCTCCATCTGTAAACCCTTAGTTATCGCCGGCGTCTCAGCTTCCTCTCTCCTCCTCAGCTTCAATCCCCTGCCCTTCTCCTCCGCCGGTGAT GGAAATGGCGATTGGTTCGGTGGAGGCGGAGGCGGCGGCGGAGGAGGAGGTGATGGATCCGGCGGAGGTGGATTTTGGAGGAAGCTGTTTTGTCCATCCG CCGCGATCGCCGACGAGTCCGAATCTCAAGAATGGAACAACCACGGGCTGCCTGCTAACATTAACGTCCCGCTGAACAAGCTCAGCAACTTCAAGAGGTA CAAGCTCTCCAAAATTCTATTTTACGATAGCAGGAGAAGGATCACCGTCGGGACGGACGATTCCTTCTTCGAGATGGTTTCTCTACAGCCAGGCGGAGTG TACACGAAAGCAGAGCTCCTTCAGGAGCTGGAGAATCTAGCGACCTGTGGAATGTTCGAGAAGGTCGATATGGAAGGGACATCGAACCCTGACGGAACAT TAGGAGTCAACATTTCCTTCACGGAGAGCACTTGGCAGTCTGCTGAGAGGTTTAGGTGTATTAATGTCGGGCTTCTGAAGCAGTCCAAGCCGATCGAGAT GGACGAGGATATGACCGAGAAGGAGAAGCTGGAGTATTTCAGGAGCCAGGAGAGGGAGTATCAGAACAGGATTGGTAAGGCGCGTCCTTGTTTGCTGTCA ACTGGTCTGAACAAAGAGATTAGGCAGATGTTGCAGGAGCATGGTAAGGTTAGTGCAAGGCTGCTGCAGAGGATTAGGGATAGAGTGCAGAAATGGTACC ATGATGAAGGTTATGCTTGTGCACAAGTTGTTAATTTCGGGAATTTGAATACTAAAGAGGTTGTTTGTGAGGTGGTTGAAGGAGATATTACTCAGCTGAG CATTCAGTTTCTTGACAAACTTGGTAATGTCGTTGAAGGGAATACTCAGTTTCCTGTTGTCCAGAGAGAATTGCCTAAGAAGTTACGACCGGGGAATGTG TTCAACATTGAAGATGGGAAGAGAGCTCTGAAGAATATAAATGCCTTGGGTTTGTTTTCAAACATTGAAGTGAATCCAAGGCCTGATGAGAAGAGAGAAG GAGGGATCATTGTTGAGATTAAGCTGAAGGAGTTAGAGGCGAAGTCGGCTGAAGTTAGTACAGAGTGGAGCCTTGTTCCTGGACGTAGTGGATGGCCCAC GTTGATTACAATCCAGCCTGGTGGAACTGTTTCTTTTGAACATCGGAATATCAAAGGGCTGAATCGGTCAGTCTCGGGCTCAATAACCACAAGCAATTTC TTTTCACCTCAGGATGATCTTGCCTTTAAGCTTGAATATGCACATCCATATCTTGATGGTGTAAAGAGTTCTCGCAATCGTACTCTTCGGACAAGTTGCT TTAACAGCCGAAAACTTAGTCCAGTCTTTACTGGCGGACCGGGAGCTGACGAGGTTCCTCCTATATGGGTTGATCGAGCCGGCATGAAAATTAATGTCAC GGAGAACTTCACACGTCAAAGCAAATTCACCTATGGATTGGTGGCGGAAGAGATAACAACACGTGATGAGAACAGTCTTATATCTGCAAAAGGCCAAAGA GTTTTGCCAAATGGTGGAGTAAGTGCAGATGGTCCACCAACGACCCTCAGTGGTACTGGCATCGACCGTGTGGCATTTTTGCAGGCCAATATCACTCGCG ACAACACGAAATTTCTCAACGGAGCTCTCGTTGGTGAAAGGAATGTCTTTCAGGTAGATCAAGGCCTTGGCATTGGCAGCAAATTACCATTCTTCAACCG TCACCAGCTGACAGTTACACAGTTTATTCCGCTACTAAAGGTGGAGGAAGGTGCCGGTAAACAGCCGCCACCTATTCTAGTCCTTAACGGTCATTACGGT GGATGCGTGGGAGATCTTCCGAGTTACGATGCTTTTACACTGGGCGGACCTTATTCCGTGAGAGGTTACAACATGGGCGAGCTTGGAGCAGCACGAAACA TCCTCGAGCTTGGAGCTGAGGTAAGGATACCTGTGAGAAATACCCATGTATACGCATTTGCGGAGCACGGCAATGATCTTGGGAGTTCCAAGGATGTGAA GGGTAACCCCACGGGAATATACAAGAGAAAGGGACATGGTTCGTCATATGGCGTTGGTGTAAAGCTGGGGTTGGTGCGAGCAGAATACGCAGTGGATCAC AACTCACGCTCGGGTTCGTTGTTCTTCCGGTTCGGGGAGAGATATTAA
AA sequence Show only first row Show all	>Lus10016508 pacid=23144852 polypeptide=Lus10016508 locus=Lus10016508.g ID=Lus10016508.BGIv1.0 annot-version=v1.0 MSSFAGSANFLVKLPITSRRNSRTAAPSPSPRSVSFKCYFTPSSSSSSSSSSLLNPKPSVSKGKRNSLLTSICKPLVIAGVSASSLLLSFNPLPFSSAGD GNGDWFGGGGGGGGGGGDGSGGGGFWRKLFCPSAAIADESESQEWNNHGLPANINVPLNKLSNFKRYKLSKILFYDSRRRITVGTDDSFFEMVSLQPGGV YTKAELLQELENLATCGMFEKVDMEGTSNPDGTLGVNISFTESTWQSAERFRCINVGLLKQSKPIEMDEDMTEKEKLEYFRSQEREYQNRIGKARPCLLS TGLNKEIRQMLQEHGKVSARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTKEVVCEVVEGDITQLSIQFLDKLGNVVEGNTQFPVVQRELPKKLRPGNV FNIEDGKRALKNINALGLFSNIEVNPRPDEKREGGIIVEIKLKELEAKSAEVSTEWSLVPGRSGWPTLITIQPGGTVSFEHRNIKGLNRSVSGSITTSNF FSPQDDLAFKLEYAHPYLDGVKSSRNRTLRTSCFNSRKLSPVFTGGPGADEVPPIWVDRAGMKINVTENFTRQSKFTYGLVAEEITTRDENSLISAKGQR VLPNGGVSADGPPTTLSGTGIDRVAFLQANITRDNTKFLNGALVGERNVFQVDQGLGIGSKLPFFNRHQLTVTQFIPLLKVEEGAGKQPPPILVLNGHYG GCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEVRIPVRNTHVYAFAEHGNDLGSSKDVKGNPTGIYKRKGHGSSYGVGVKLGLVRAEYAVDH NSRSGSLFFRFGERY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10016508 [exp]	0	1
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10015058 [exp]	11.4	0.8666
AT1G14060			GCK domain-containing protein ...		Lus10026621 [exp]	11.4	0.8825
AT1G73160			UDP-Glycosyltransferase superf...		Lus10032187 [exp]	11.6	0.9001
AT5G43390			Uncharacterised conserved prot...		Lus10021875 [exp]	12.0	0.8783
AT5G65490			unknown protein		Lus10002654 [exp]	15.5	0.8436
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10036976 [exp]	18.7	0.8957
AT4G12040		AtSAP7	stress-associated protein 7, A...		Lus10030150 [exp]	20.3	0.8029
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030601 [exp]	23.9	0.8660
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10028892 [exp]	27.7	0.8735
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Lus10003076 [exp]	30.2	0.8766

Compare expression of checked genes

Lus10016508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.