Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11290 340 / 8e-107 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 330 / 9e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 322 / 1e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G18750 315 / 1e-96 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49710 310 / 3e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 315 / 3e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G35130 310 / 4e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 310 / 9e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15130 301 / 3e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 301 / 9e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040776 [exp] 894 / 0 AT1G11290 272 / 7e-82 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040997 [exp] 823 / 0 AT4G13650 370 / 8e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 345 / 4e-108 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 329 / 2e-100 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 322 / 3e-99 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 317 / 3e-98 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 315 / 3e-97 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030249 [exp] 313 / 3e-97 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 309 / 7e-96 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G035100 [exp] 671 / 0 AT4G13650 397 / 8e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 357 / 8e-111 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 328 / 2e-102 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 328 / 1e-101 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G012500 [exp] 324 / 3e-101 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 325 / 5e-101 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G151200 [exp] 318 / 1e-98 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G155000 [exp] 318 / 1e-98 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 319 / 5e-98 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 317 / 8e-98 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016509 pacid=23144864 polypeptide=Lus10016509 locus=Lus10016509.g ID=Lus10016509.BGIv1.0 annot-version=v1.0 ATGGCATTGAACTTGCGTTGTTTCGTTGCATCTTGGAAATCCGCCGGCGGCCAATTGATTTCCCGAGCTCCGGCAAACTCTGCCCGCCACTTCACCGGCG CCAATTTACATCTTTCTAGCCGCATTGAACGCTTCGATTGCGGCTGCGAGAAGGATCGGCTTTCAGATGAGCTGGAACTACTTGCCGGGCTTCAGAATCC TCTGTCTCTAACCGATGCTTACTTCATCAACAAAGCCGTCTCCTTCTGCGCCAAATCCCCTTCCTTCTTCTTCACGGGTACTCAATTCCATTCCCTTGTT GTTAAACTGGGTCTCACTTCCAACGTTTACGTGTGTAGCGCAGTTGTAGATATGTATGCAAAATGCGGAGACATCACAGCTGCCCACCAAATATTCGATG AAATGCCCGTGAGAAATTCCGTCTCTTGGAATTCGCTTATTTCTGGCTATCTGGATGCCCATGTCCCGGAAATCGCACTTCGATTGTTCGTCGAGATGCT CCGAGTTGGAACATCCGTTTCGCCATTTAACCTTTCTAGCTGTCTGGTGGGTTGTTCACACTTGGAGGACAAGAAGCTCGGAGAGCAGCTTCATGGAGTC AGTTCGAAAACCGGGATTGATCATCATGTCGTTGTGGGAACCGTTCTGATCGATATGTACTCGAAATCCGGTAATGTTGATAACTCAAAACGAGTTTTCG ACAGTATAGTGGACAGGAATGTCATTACCTGGACATCTATGGTTACAGCATATTCACGGAACAAAAATCCTCGCGAAGCAATGATGTTAGCGAGGGAGAT GATGCGATCTGGCTCGAAACTAAATAGTCTGACGTATAACAGCCTACTGAGTTCATTTTCCAGTCCGGATTACTTAGTCTACTGCAAGCAAGTTCATTGT TGCATAATTCGTCAAGGTTTCGAATCGAACGAGTATTTATCAGCTACTCTTGCTACTGTCTATTCGAAATGTAGTAACACCTTGGATGATTTTGTTAAGG TATGCTCTGGTATTACGATACGCGACCAAGTATCGTGGAACGCCATGATTGCTGGTTACTGCAATCTCGAACGTGGGAACGAAGCTCTCAGGTGTTTCGG TGAAATGAGGCGGGCTGGAATGGACGGAGATCTCTACACGTTTACAAGTCTGTTGGGAACGATCGGGAATAATAGTTCGTTTCTCGAGGAAGGAAGAGAG GTGCATGCTGTCATTTCCAAGACTCGGTACGCTTCGAGTTTGAGCGTTCAGAACGGTATCGTTTCCATGTACGCGAGATGCGGTGCTATGGATGAATCGA AGAGGATGTTCAGGTTGATGCCGAAGCATGATGTCATTTCGTGGAACTCGCTTCTAACGGCGTGTGCTCACCATGGATACGGTAACGAAGCTGTGGAGCT ATTCGAAGAAATGAGAAAAGCTGGAAAGACAAAACCTGATGCCACCAGTTTCCTTGCTGTGTTATCCGCGTGCAGCCATTCTGGTGCTGTGAATAAGGGA CTCGAGTATTTCGAGCTTTTGAAGCACGATGCTTTGCTCGGACCTCCTGCATTGGAGCATTACGCTAGTGTCGTCGACATTTTTGGCCGCGCTGGACATC TAGACGAGGCTGAAATTTTTATCGGCAGCATGCCGATAGAACCTGGTCCTTCGGTCTATAAGGCTTTGCTTAGTGCTTGTATGTTACACGGAAACGTGGA GGTTGCGGAACGTTCTGCACGGAAGCTTGTAAATCTTTGGCCTGATGATAGCGCGACGTACGTTATGCTGTCTAATATTTTGAAAACTAGTGATAATTGG GAAGGTGCAGCAGTTGTGCACAAACTGATCAGTCACCGAGGCATGAAGAAAATGTCTGGTTGTAGCTGGAGTTAA
AA sequence Show only first row Show all	>Lus10016509 pacid=23144864 polypeptide=Lus10016509 locus=Lus10016509.g ID=Lus10016509.BGIv1.0 annot-version=v1.0 MALNLRCFVASWKSAGGQLISRAPANSARHFTGANLHLSSRIERFDCGCEKDRLSDELELLAGLQNPLSLTDAYFINKAVSFCAKSPSFFFTGTQFHSLV VKLGLTSNVYVCSAVVDMYAKCGDITAAHQIFDEMPVRNSVSWNSLISGYLDAHVPEIALRLFVEMLRVGTSVSPFNLSSCLVGCSHLEDKKLGEQLHGV SSKTGIDHHVVVGTVLIDMYSKSGNVDNSKRVFDSIVDRNVITWTSMVTAYSRNKNPREAMMLAREMMRSGSKLNSLTYNSLLSSFSSPDYLVYCKQVHC CIIRQGFESNEYLSATLATVYSKCSNTLDDFVKVCSGITIRDQVSWNAMIAGYCNLERGNEALRCFGEMRRAGMDGDLYTFTSLLGTIGNNSSFLEEGRE VHAVISKTRYASSLSVQNGIVSMYARCGAMDESKRMFRLMPKHDVISWNSLLTACAHHGYGNEAVELFEEMRKAGKTKPDATSFLAVLSACSHSGAVNKG LEYFELLKHDALLGPPALEHYASVVDIFGRAGHLDEAEIFIGSMPIEPGPSVYKALLSACMLHGNVEVAERSARKLVNLWPDDSATYVMLSNILKTSDNW EGAAVVHKLISHRGMKKMSGCSWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10016509 [exp]	0	1
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	1.0	0.8754
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	3.9	0.8339
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	4.0	0.8365
AT1G09190			Tetratricopeptide repeat (TPR)...		Lus10029853 [exp]	5.0	0.8294
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	5.7	0.8321
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10013283 [exp]	8.0	0.8171
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	8.7	0.7958
AT4G18840			Pentatricopeptide repeat (PPR-...		Lus10010902 [exp]	8.8	0.7851
AT3G49990			unknown protein		Lus10015447 [exp]	9.5	0.8195
					Lus10029579 [exp]	10.8	0.8158

Compare expression of checked genes

Lus10016509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.