Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59610 241 / 3e-79 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G39960 74 / 1e-14 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 74 / 1e-14 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G08970 74 / 1e-14 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT2G22360 72 / 6e-14 DNAJ heat shock family protein (.1) AT4G13830 67 / 2e-13 J20 DNAJ-like 20 (.1.2) AT1G68370 70 / 3e-13 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT1G59725 67 / 2e-12 DNAJ heat shock family protein (.1) AT1G59980 67 / 3e-12 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G24120 67 / 3e-12 ARL1 ARG1-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040777 [exp] 495 / 6e-179 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10002355 [exp] 70 / 4e-14 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10037502 [exp] 72 / 5e-14 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10023122 [exp] 72 / 6e-14 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10041671 [exp] 68 / 6e-14 AT1G80920 138 / 2e-42 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) Lus10002852 [exp] 72 / 8e-14 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10002356 [exp] 69 / 8e-14 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10011484 [exp] 71 / 1e-13 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10003150 [exp] 69 / 1e-13 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G072700 [exp] 323 / 3e-111 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.005G160200 [exp] 77 / 1e-15 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.007G094900 [exp] 74 / 2e-14 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.016G120000 [exp] 73 / 2e-14 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G073900 [exp] 72 / 6e-14 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.010G036200 [exp] 71 / 7e-14 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.008G123200 [exp] 69 / 4e-13 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.003G031800 [exp] 69 / 4e-13 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.008G193500 [exp] 69 / 7e-13 AT1G24120 568 / 0.0 ARG1-like 1 (.1) Potri.010G122300 [exp] 67 / 2e-12 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10016510 pacid=23144873 polypeptide=Lus10016510 locus=Lus10016510.g ID=Lus10016510.BGIv1.0 annot-version=v1.0 ATGAATGGATTGCTTCTCCTTCCAACGCCACAGAAGCTTCTCGTCTGTTATACTCCACAGCTCCAAGCAAGATCTAAACTTCACTTACAAAGCCGGGAAA TTTCTTCGTTACCCAGTTGTAGTTTTCTCGATGGCTGTGGCTTTGGCGCTCTTTCTGTCTCTCAAGGATCGTTGTTGGCTCCGGTGTATGGGAATTTCAA AAGCAGGAGGAGAAGAAGAGAATTTACGACAGTATTGAAAGCTAGCCGCAGGGAATCTCCTTATGAAGTATTGGGAGTCTCTCCTTCAGCAAATCAGGAT GAAATCAAAAGGGCTTACAGGAAACTTGCTCTCAAGTACCACCCTGATGTCAACAAAGAGGCAAATGCTCAGGAAAAATTCATGAGGATTAAACATGCCT ACAATACATTACTGGACTCAAATTCTCGAAGGAGATATGATGCAGGGAAGTCATCTGGATTTTCATATTCTGGTGCAGAAAGAGGCACAAGTAGAACCAG TACTGAAGAAGAGTTCTATGGTTTTGGTAATTTTGTGAGAGATGTTCAAGTATCTCTAGACGACTTCTTCAAAGATATCCAAGAAGAATTTCGAAACTGG GAAGCGAGTACACCATCAGACGGGAAACCGAAGAGCTTATGGGAAGAATTGGCAGAAATCGGGGAAGATTTCGTAGAGTTCCTAGAGAAAGAGCTGAACA TAACCGATTCAGAAACGGAAGGAAGTAAAAGTGAGAGTTCAAGAATGGATGATAACTCATTTTCCAAATCAACTGCAGGAGAAAGCAAACAGAAAGAGAA GAGTGGCAGCAGCCCGATCGAAGATAGCATCGACGAGATTGAGGCTACCCTTGCCAAGTTGAAGAAGGAGTTGGGTTTATAG
AA sequence Show only first row Show all	>Lus10016510 pacid=23144873 polypeptide=Lus10016510 locus=Lus10016510.g ID=Lus10016510.BGIv1.0 annot-version=v1.0 MNGLLLLPTPQKLLVCYTPQLQARSKLHLQSREISSLPSCSFLDGCGFGALSVSQGSLLAPVYGNFKSRRRRREFTTVLKASRRESPYEVLGVSPSANQD EIKRAYRKLALKYHPDVNKEANAQEKFMRIKHAYNTLLDSNSRRRYDAGKSSGFSYSGAERGTSRTSTEEEFYGFGNFVRDVQVSLDDFFKDIQEEFRNW EASTPSDGKPKSLWEELAEIGEDFVEFLEKELNITDSETEGSKSESSRMDDNSFSKSTAGESKQKEKSGSSPIEDSIDEIEATLAKLKKELGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	0	1
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10034140 [exp]	1.0	0.9198
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10040777 [exp]	2.0	0.9105
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10018909 [exp]	2.8	0.8826
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029916 [exp]	3.2	0.8760
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	3.5	0.8846
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	4.6	0.8559
AT1G12390			Cornichon family protein (.1)		Lus10004320 [exp]	4.9	0.8658
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10006873 [exp]	5.7	0.8499
AT5G19930			Protein of unknown function DU...		Lus10017753 [exp]	6.7	0.8448
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032605 [exp]	7.7	0.8311

Compare expression of checked genes

Lus10016510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.