Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59600 577 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 316 / 1e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01030 313 / 9e-98 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G53360 313 / 1e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 311 / 5e-96 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 309 / 2e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 299 / 8e-95 MEF21 mitochondrial editing factor 21 (.1) AT5G39350 301 / 5e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 298 / 7e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 306 / 4e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040917 [exp] 345 / 5e-107 AT4G01030 898 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012971 [exp] 325 / 9e-103 AT1G68930 487 / 5e-163 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009813 [exp] 332 / 2e-102 AT4G01030 820 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008967 [exp] 320 / 2e-99 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018492 [exp] 309 / 1e-97 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028855 [exp] 320 / 8e-97 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 303 / 2e-96 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008136 [exp] 306 / 4e-96 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 305 / 8e-96 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G243800 [exp] 693 / 0 AT5G59600 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G097000 [exp] 354 / 1e-111 AT4G01030 906 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G014900 [exp] 332 / 7e-107 AT5G59600 334 / 6e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 325 / 1e-104 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 322 / 1e-100 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 310 / 1e-98 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.018G085800 [exp] 311 / 1e-97 AT4G02750 491 / 3e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G216100 [exp] 305 / 3e-96 AT2G37310 724 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 310 / 2e-95 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G021300 [exp] 306 / 2e-95 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016511 pacid=23144786 polypeptide=Lus10016511 locus=Lus10016511.g ID=Lus10016511.BGIv1.0 annot-version=v1.0 ATGCTTGCTCTTATTAGACCCAGAGTTTTCAGGGACGAACGCAAATTGAGCTTCTACACCGGCTGCCACTCTCGGTTTCATTCATCCCCAGAAGCGTACG CGGAGATCATCAGAACCTACTCTCGCCGCCGATCGTTGAGCAAAGGCAAAGCACTCCACGCTCACCTGATCGTCAACGGTTCGGCACGCCTTACTTATCT GCAAGCAAAGCTCGTGTCTTTCTACACCGAGTGTAGACAGTTGATCAATGCACGTAAACTGTTCGACGAAATTCCTCACTCAAACTCTCGCAGGTGGATA GTCATCGTGGGGGCCTATTCGCGGTGTGGATTTTACCGGGAAGCTCTGGATGTCTTCTTCGAAATGAGAAGAGAAGGATCCCCCGTTATTAGCCAGTTCG TCATTCCTAGTGTTCTCAAGGCTTGCGGCCATGTGTTTGATTTGCAGATTGGAAAGGTACTGCATTGCCTGATTTTGAGATGCTGGTTTTTAACATCAGA TGCGTTTGTAGTGAGTGCATTGGTTGATATGTACTCCAAATGCAGACAGCTAGAGAATGCGAGGAGAGTTTTCGATATGGTTCCGGAGAAGGACTTGGTG CTGTTGAATGCACTGGTTTCGGGCTATGTTCGACATGGTCTTACAGAAGAAGCTTTTAGTTTGGTTGAACGAATGCAACAAGTTGGATTTCATCCAAATG TAGTAACATGGAACACTTTGATTGCTGGGTTTGCACAGAAGGGTGATCGAGTAAAGGCGCTCGAACTTTTTGATCTGATGGCTCGAAACGGGATAGACCC TGATGTGGTTTCGTGGACATCGGTGATATCCGGTCTAGTGCAAAACTTCTGCTATGAGGAAGCTTTCGCTACGTTTAAAAACATGTTGATTCATGGTTTC TGCCCGAGCCATGCCACAATCGGTGGCATCTTGCCGGCTTGTGCCAGCTCAGCGAATGTCAGGCGAGGCAAGGAGCTGCATTGTTACGCGGTGGTAATAG GAGTCGAGGATGATATATATGTACGGAGTGCTCTCGTTGATATGTACGCGAAATCCGGGTTTCTTCCAGAAGCGAGATCTATTTTCCACAGGACAGAGGA GAAGAACACTGCTACATGGAATTCAATGATCTTCGGGAATGCAAACAACGGATGCTCAGACGAAGCGATCAGACTGTTTACACGGATGGAGAAGACCGAG GGCGAAAAGCTAGACCACTTGACTTTCACAGCGGTGTTCACTGCCTGTAGTCATGCAGGAATGGTCGAGTTGGGGCAAAGTTTGTTCGTTTTGATGCAAA GGAAGTATGAGATTGCTCCGAGATTGGAGCATTACGCGTGCTTGGTGGATCTACTTGGCAATGCCGGGAAACTTACAGAGGCTTACGACCTGATCAAGAC GATTCCTACGGAGCCGGATATTTTTGTGTGGGGGGCGTTGTTAGGGGCGTGTAGAAAACACGGCAATATCGAGCTTGGAGATATTGCAGCTAAGCATTTA GTTGAGCTCGAGCCCAGAAACACGGGGAATAATGTTTTGATGTCGAGTTTGCATGCTGAAGCTGGAAGTTGGAGTACTGTTGCAAAGTTTAAGAAGATGC TGAATAATAAGAAATTGAGGTTTTCTGGTCGCAGTTGGATAGAGACTGGCTGA
AA sequence Show only first row Show all	>Lus10016511 pacid=23144786 polypeptide=Lus10016511 locus=Lus10016511.g ID=Lus10016511.BGIv1.0 annot-version=v1.0 MLALIRPRVFRDERKLSFYTGCHSRFHSSPEAYAEIIRTYSRRRSLSKGKALHAHLIVNGSARLTYLQAKLVSFYTECRQLINARKLFDEIPHSNSRRWI VIVGAYSRCGFYREALDVFFEMRREGSPVISQFVIPSVLKACGHVFDLQIGKVLHCLILRCWFLTSDAFVVSALVDMYSKCRQLENARRVFDMVPEKDLV LLNALVSGYVRHGLTEEAFSLVERMQQVGFHPNVVTWNTLIAGFAQKGDRVKALELFDLMARNGIDPDVVSWTSVISGLVQNFCYEEAFATFKNMLIHGF CPSHATIGGILPACASSANVRRGKELHCYAVVIGVEDDIYVRSALVDMYAKSGFLPEARSIFHRTEEKNTATWNSMIFGNANNGCSDEAIRLFTRMEKTE GEKLDHLTFTAVFTACSHAGMVELGQSLFVLMQRKYEIAPRLEHYACLVDLLGNAGKLTEAYDLIKTIPTEPDIFVWGALLGACRKHGNIELGDIAAKHL VELEPRNTGNNVLMSSLHAEAGSWSTVAKFKKMLNNKKLRFSGRSWIETG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10016511 [exp]	0	1
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003324 [exp]	1.4	0.8549
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	2.2	0.8343
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021068 [exp]	3.2	0.8522
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10007476 [exp]	4.1	0.7862
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	4.9	0.8448
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10010183 [exp]	4.9	0.8278
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10023251 [exp]	7.2	0.8016
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	7.5	0.8466
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10001557 [exp]	9.3	0.7477
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	9.9	0.8247

Compare expression of checked genes

Lus10016511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.