Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29180 59 / 3e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040781 [exp] 112 / 5e-32 AT2G29180 83 / 2e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G243500 [exp] 76 / 2e-17 AT2G29180 64 / 5e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016512 pacid=23144870 polypeptide=Lus10016512 locus=Lus10016512.g ID=Lus10016512.BGIv1.0 annot-version=v1.0 ATGGCTGCAACCTCCATTTCCCCACTTCCGCCAATCCCTTTCTCTTCTAAACCCAGACCACCATCCTCACTTCTCTTCCTACCGCCACCTGTCACCACCT CCTTATCCACTCCTAAACCCAGATTCCCATCTCACCACAAACCCCACACCAGAAGAAATTGCATAACCCTCGCCGCCGCCGTAGAGGCAGCTCCGCCGGC CGACGTAGTCGCCCCACTCGAAGAGATAGTCGTCCCGGACGATGGTGTTGGGACCGTCATCTCCACCCTTCTCTTCATCGCTTTCGTCATCCTCTCTGTC CTCACTATCGGAGTGATATACATTGCGGTTACGGATTTCCTGCAGAAGAGGGAAGGGGATAAGTTCAAGAAGGAAGAAGAAGAGAAGCAGAAGAAGAAAG GTGGGAAAGAGAGGAAGCTTAGGGCTAGGTCTAGAGCTGGCCCAAAAGGATTCGGCCAGAAGGTTGCCGTCGACGAAGAGGATGAACTCGACGACTAA
AA sequence Show only first row Show all	>Lus10016512 pacid=23144870 polypeptide=Lus10016512 locus=Lus10016512.g ID=Lus10016512.BGIv1.0 annot-version=v1.0 MAATSISPLPPIPFSSKPRPPSSLLFLPPPVTTSLSTPKPRFPSHHKPHTRRNCITLAAAVEAAPPADVVAPLEEIVVPDDGVGTVISTLLFIAFVILSV LTIGVIYIAVTDFLQKREGDKFKKEEEEKQKKKGGKERKLRARSRAGPKGFGQKVAVDEEDELDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29180			unknown protein		Lus10016512 [exp]	0	1
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10001982 [exp]	3.2	0.9310
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10016969 [exp]	3.9	0.9349
AT4G11175			Nucleic acid-binding, OB-fold-...		Lus10035773 [exp]	5.5	0.9267
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10009586 [exp]	6.0	0.9134
AT4G37510			Ribonuclease III family protei...		Lus10019289 [exp]	8.4	0.9215
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002773 [exp]	11.0	0.8633
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10028683 [exp]	11.0	0.8978
AT4G37510			Ribonuclease III family protei...		Lus10011533 [exp]	11.7	0.9262
AT2G14880			SWIB/MDM2 domain superfamily p...		Lus10013893 [exp]	11.8	0.8983
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Lus10013424 [exp]	12.4	0.9046

Compare expression of checked genes

Lus10016512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.