Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29190 974 / 0 APUM2 pumilio 2 (.1.2) AT2G29200 956 / 0 APUM1 pumilio 1 (.1) AT2G29140 949 / 0 APUM3 pumilio 3 (.1) AT3G10360 590 / 0 APUM4 pumilio 4 (.1) AT3G20250 492 / 1e-157 APUM5 pumilio 5 (.1) AT4G25880 418 / 1e-130 APUM6 pumilio 6 (.1.2.3) AT1G22240 183 / 3e-49 APUM8 pumilio 8 (.1) AT1G78160 181 / 2e-47 APUM7 pumilio 7 (.1) AT5G56510 170 / 3e-44 APUM12 pumilio 12 (.1) AT4G08840 164 / 1e-42 APUM11 pumilio 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040782 [exp] 1768 / 0 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10001567 [exp] 1072 / 0 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 1046 / 0 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10002708 [exp] 933 / 0 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10037976 [exp] 657 / 0 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 654 / 0 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10000516 [exp] 632 / 0 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10033353 [exp] 513 / 7e-166 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10034808 [exp] 509 / 3e-163 AT3G20250 880 / 0.0 pumilio 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G034900 [exp] 1281 / 0 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.001G243400 [exp] 1213 / 0 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.010G201100 [exp] 942 / 0 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.008G058300 [exp] 907 / 0 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.008G036500 [exp] 654 / 0 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 642 / 0 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G004300 [exp] 509 / 9e-164 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.006G165100 [exp] 496 / 1e-158 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.003G009900 [exp] 486 / 1e-154 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.003G222300 [exp] 203 / 3e-54 AT5G56510 497 / 4e-168 pumilio 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00806 [flax] [poplar] PUF Pumilio-family RNA binding repeat CL0020 [flax] [poplar] PF07990 [flax] [poplar] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Lus10016513 pacid=23144891 polypeptide=Lus10016513 locus=Lus10016513.g ID=Lus10016513.BGIv1.0 annot-version=v1.0 ATGTTGTCTGAATTGGGAAGGAGGCCGATGATGGGAGGAGCAAGTGATGGATCCTACGGCGATGACTTGGAGAAGGAAATAGGGTTGCTACTGCGCACTA GGCAAGAAGCCGATGATGATCTTGAGAGGGAGCTCAATATGTACAGAAGCGGCTCTGCTCCTCCCACCGTGGAGGGCTCTCTCAACGCCGTCGGCGGCTT GTTCGGCGGCGGTGGTCCGGCTGGAGGTGGCGGTGCTAGCTTCTCTGACTTTGTTAGTGGTAAAAACGGTGGATTTCTGAATGAAGAGGAGCTTAGGTCT GACCCAGCTTATTCAGCTTACTATTACTCTAATGCGAATTTGAATCCTAGGCTGCCGCCTCCGTTGATGTCCAAGGAGGATTGGAGGTTTTCTCAGAGAA TGAAGGGAGGAGGTGGAAGTTCAGCTGTTGTAGGTGGGATTGGGGATAGGAGGAGTATCAGTAGGGGGGCTGATAATGGGAGTGGAAGGTCGATGTTCGC GATGCCTCCCGGTTTCAAATCGAGGAAGCTCGAGAATGGTAGCGAGCCGGAGAATGTTCGCAACTCTAGTGAATGGGGTGGTGATGGGCTGATAGGTTTG CCAGGGTTGGGACTTGGGGCTAAGCAAAAGAGTCTTGCTGATATCTTTCAGTGTATGTACTTGAGAAGTATGAATGAGCATACCTCTGGTGCTTATTCGT TATGGATTCTGATAGTTTCAGATAGACTTTTAGGTGCTGACTGTTTGATTTGTTCCATGGTTGCGCCTGCTGCTGTGGGCCACCCTTCCCGGCCATGTAG TCGAAATGCGTTCAGCGAAAATGTCGATAATTTAGGTGCAGCCGAAGCTGAGTTAGCTCACTTGCGCCGTGAATTGTCCTCCGCAGATCCTGTACGGTCT GTATCCAATGGACAAGGATCTTCTTCTGTGCAAAGTGTCGGCCAACCTTCATCCTATTCCTATGCTGCTGTTCTTGGTGCGTCTTTATCCAGGAGCAATA CTCCTGATGCTCAAAAAGTTGTTGCTAGGGCTCCTAGTCCTTGTCCTACACCCATTGGTCAGGGTAGAAATTCCGCATCCGAAAAGAGAGCTGGTGGTGG CACGGGTTCCAACTCATTTAATGGTGCCCCGAGTGAATCTGAACAGCTTGTGAATGCTTTAAATGGTATGACCTTGTCAGCGAATAACGGTGTAGTCGAA GAAAACCAGTTGCGATCTCAGGTCGAACACGATGATCGCCAGAATTATTTGTTCGGTATCCAAGGTGGTGGTCAGAATCATTTGAAGCAGAATGCTTACT ATAAGAATTCCGACTCTGGAAAGATGTCGTATGCTGATTATGGCAAGAGCAGTGGCGGTAGCCCGGACCTGATGGGCTCTTCTTCCTATGGGGAAAGGCA AAAGCCAGATGTTCATGGTAATTCGTATTTGAATGGATCTCCTCCGTTTAATGTCAACAGCAGAAGTAGCTTACCGGCTTACCAGCATCTAGATAGCATG AATTCATCACTTCTGAACTATGGAGTGGGTGGATATTCTGCCAACCCGGGATTAAACTCAATGATGGCTGGCCAAATCGGCACTGGAAATCTTCCTCCTT TATTCGAGAATGTTGCTGCAGCATCGGCCATGGGTGGTGTCCATGGAATGGAGTCTAGAGTTCTTGGAGGAGCTGCTAATTCCGAGTTGCACAATTTTCG AAGACTGGGGAGTCCTATTGCTGGGAGTGCCTCACAAGCACCATATGTTGATCCATTGTATCTTCAACAGTATCTTAGAACTCCTGAATATGCTGCAGCT CAGCTTGCAGCACTTAATGATCCCACCGGTGAAGGGAGCTATCTGGGAAACTCGTACCTGAACTTGCTCGAACTGCAAAAAGCCTATGCTGGAGCTATGT TGTCTCCACACAACAAATCACAGTATGGAGTTCCCGGTGGTGGGAAATCCTGCAATTCAAATCTCCATAACTACTATGGAAATCCTGGTTATGGTGTTGG AATGTCATATCCCGGGAGTCCCCTGGCAAGCCCTATCATGGGTCCGAACTCTCCTGGTAGTCCGATGAGATCTCACAACGATCTGAATATGAGATTTGCT TCCGGTATGAGGAACATGGGCGGTGGTGGTATCATGGGTCCTTGGCACTTGGATGGAGGAATGGATGAAAGCTTTGTATCCTCACTGCTGGAAGAGTTCA AAAGCAACAAAACAAAGTGTTTGGAACTTTCGGAAATCGCAGGTCATGTTGTGGAGTTCAGTGTTGATCAATACGGGAGCCGGTTCATCCAACAGAAGCT AGAGACGGCCACGGCAGATGAGAAGAACATGCTGTATAAGGAAATCATGCCACGAGCTCTTGCTCTGATGACCGATGTGTTTGGTAATTATGTGATCCAG AAGTTTTTCGAGCATGGACTGCCATCTCAGAGGAGAGAACTAGCTGCCAACCTACCGGGGCACGTCCTGACGCTAAGTCTTCAAATGTATGGCTGTCGAG TGATTCAAAAGGCTATCGAAGTGGTTGACCTTGACCAGAAGATTCAAATGGTTGAAGAGCTTGACGGTCATGTCATGCGTTGTGTTCGTGATCAGAATGG GAACCATGTCATCCAAAAATGCATCGAGTGTATCCCCGAGGAAAATATCCAGTTCATTGTCTCGACTTTCTTCGATCAAGTAGTGACCCTCTCTACCCAT CCATATGGCTGCCGTGTGATACAGAGGGTCCTGGAGCACTGTCTGGACCCAGAAACACAGAGCAAAGTCATGGATGAGATTCTGGCAGCTGTCAGCATGT TAGCTCAAGATCAATACGGCAATTATGTTGTTCAGCATGTACTGGAGCATGGGAAGCCCCACGAGCGATCCACAATCATTAAGGAGTTGGCCGGGAAGAT TGTCCAGATGAGTCAGCAGAAGTTTGCTTCTAATGTTGTAGAGAAGTGTCTAACATTTGGTGGCAAGGAGGAACGCCAGCTACTGGTGAACGAGATGCTC GGCACTACAGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAGTTTGCAAACTACGTCGTACAGAAGGTGCTGGAGACCTGTGAGGATCAGCAGC GAGAGCTGATCATGACACGAATCAAAGTCCATCTCAACGCGCTGAAGAAGTACACTTATGGGAAGCATATCGTAGCCCGCGTAGAGAAACTCGTAGCTGC TGGAGAGAGGAGAATGGCTGCACAGTCTCTGCATCCTAGTGCATAG
AA sequence Show only first row Show all	>Lus10016513 pacid=23144891 polypeptide=Lus10016513 locus=Lus10016513.g ID=Lus10016513.BGIv1.0 annot-version=v1.0 MLSELGRRPMMGGASDGSYGDDLEKEIGLLLRTRQEADDDLERELNMYRSGSAPPTVEGSLNAVGGLFGGGGPAGGGGASFSDFVSGKNGGFLNEEELRS DPAYSAYYYSNANLNPRLPPPLMSKEDWRFSQRMKGGGGSSAVVGGIGDRRSISRGADNGSGRSMFAMPPGFKSRKLENGSEPENVRNSSEWGGDGLIGL PGLGLGAKQKSLADIFQCMYLRSMNEHTSGAYSLWILIVSDRLLGADCLICSMVAPAAVGHPSRPCSRNAFSENVDNLGAAEAELAHLRRELSSADPVRS VSNGQGSSSVQSVGQPSSYSYAAVLGASLSRSNTPDAQKVVARAPSPCPTPIGQGRNSASEKRAGGGTGSNSFNGAPSESEQLVNALNGMTLSANNGVVE ENQLRSQVEHDDRQNYLFGIQGGGQNHLKQNAYYKNSDSGKMSYADYGKSSGGSPDLMGSSSYGERQKPDVHGNSYLNGSPPFNVNSRSSLPAYQHLDSM NSSLLNYGVGGYSANPGLNSMMAGQIGTGNLPPLFENVAAASAMGGVHGMESRVLGGAANSELHNFRRLGSPIAGSASQAPYVDPLYLQQYLRTPEYAAA QLAALNDPTGEGSYLGNSYLNLLELQKAYAGAMLSPHNKSQYGVPGGGKSCNSNLHNYYGNPGYGVGMSYPGSPLASPIMGPNSPGSPMRSHNDLNMRFA SGMRNMGGGGIMGPWHLDGGMDESFVSSLLEEFKSNKTKCLELSEIAGHVVEFSVDQYGSRFIQQKLETATADEKNMLYKEIMPRALALMTDVFGNYVIQ KFFEHGLPSQRRELAANLPGHVLTLSLQMYGCRVIQKAIEVVDLDQKIQMVEELDGHVMRCVRDQNGNHVIQKCIECIPEENIQFIVSTFFDQVVTLSTH PYGCRVIQRVLEHCLDPETQSKVMDEILAAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGKIVQMSQQKFASNVVEKCLTFGGKEERQLLVNEML GTTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELIMTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMAAQSLHPSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29190		APUM2	pumilio 2 (.1.2)		Lus10016513 [exp]	0	1
AT4G16100			Protein of unknown function (D...		Lus10016841 [exp]	2.2	0.8364
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	4.0	0.8626
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028556 [exp]	4.7	0.7957
AT5G17930			MIF4G domain-containing protei...		Lus10014048 [exp]	7.5	0.8453
AT4G02120			CTP synthase family protein (....		Lus10025043 [exp]	11.5	0.8504
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	12.4	0.8268
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10008806 [exp]	13.3	0.8128
AT5G13560			unknown protein		Lus10023462 [exp]	18.3	0.7959
AT1G53600			Tetratricopeptide repeat (TPR)...		Lus10008607 [exp]	20.4	0.8048
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10004731 [exp]	23.4	0.8326

Compare expression of checked genes

Lus10016513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.