Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016514 pacid=23144798 polypeptide=Lus10016514 locus=Lus10016514.g ID=Lus10016514.BGIv1.0 annot-version=v1.0 ATGAGAATCAGTGAGAGTCAATATCGGCAGATGCGGCATCTTCAAGATTCACAAACTTATCCAAGCCCTCCCATGACCGAACCGAATCGGTCGTCGGTTG GGTTAGGTTTTATTGAGAATCTTGATGATGCTGCATCGGCAGATATATTGGCTATAAGTAAAATTAATTCTGTTGAACACCGGCAGTTCCGGGAGTTGTT GAAAAGGGCGCGAGGGATCAAGATTATAGCATCTAAGAATCCGGTGGAAGTTCATATCGAAGCTTATCTAAGGATATATCACAGAGTGGTTGATGGTGCC CTAAACAAAGAAGATGAATGCGGGCACTACTAG
AA sequence Show only first row Show all	>Lus10016514 pacid=23144798 polypeptide=Lus10016514 locus=Lus10016514.g ID=Lus10016514.BGIv1.0 annot-version=v1.0 MRISESQYRQMRHLQDSQTYPSPPMTEPNRSSVGLGFIENLDDAASADILAISKINSVEHRQFRELLKRARGIKIIASKNPVEVHIEAYLRIYHRVVDGA LNKEDECGHY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016514 [exp]	0	1
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004029 [exp]	1.7	0.7689
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10024405 [exp]	2.0	0.7766
AT4G13230			Late embryogenesis abundant pr...		Lus10038156 [exp]	2.4	0.7879
AT4G31050			Biotin/lipoate A/B protein lig...		Lus10008181 [exp]	7.9	0.7305
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10027396 [exp]	13.5	0.7375
AT4G27300			S-locus lectin protein kinase ...		Lus10037865 [exp]	14.0	0.6817
					Lus10026869 [exp]	22.0	0.6729
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016211 [exp]	22.4	0.7650
					Lus10031737 [exp]	28.6	0.6656
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10024671 [exp]	40.3	0.6830

Compare expression of checked genes

Lus10016514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.