Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29090 540 / 0 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT4G19230 498 / 2e-174 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 497 / 4e-174 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT3G19270 459 / 7e-159 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT3G50660 221 / 4e-66 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT1G05160 219 / 1e-65 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT5G05690 218 / 4e-65 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G13730 217 / 8e-65 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT2G32440 216 / 3e-64 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT2G42850 204 / 9e-60 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040785 [exp] 707 / 0 AT1G07510 1078 / 0.0 FTSH protease 10 (.1) Lus10033308 [exp] 491 / 1e-171 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 490 / 4e-171 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 483 / 2e-168 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10012675 [exp] 444 / 1e-152 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10042652 [exp] 437 / 5e-150 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10019858 [exp] 433 / 2e-148 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 429 / 2e-147 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10037273 [exp] 340 / 2e-113 AT4G19230 461 / 2e-161 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G242600 [exp] 561 / 0 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.009G033900 [exp] 558 / 0 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.004G235400 [exp] 486 / 2e-169 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.004G140900 [exp] 468 / 2e-162 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.014G029100 [exp] 463 / 1e-160 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G126100 [exp] 461 / 5e-160 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 458 / 1e-158 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.005G124000 [exp] 238 / 6e-73 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.007G026500 [exp] 238 / 1e-72 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.002G069600 [exp] 236 / 5e-72 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10016515 pacid=23144881 polypeptide=Lus10016515 locus=Lus10016515.g ID=Lus10016515.BGIv1.0 annot-version=v1.0 ATGCTCAACATTACACCGACGCCGGAGCTCCTCCTTCTAATTATCACCATCCTCCCTTTCCTCATCCTCCTCCTCCGAAACCGCCGCCGTCATCGTCATC GCTCCTCCCTCCCACCAGGGTCAATGGGGTGGCCCCACTTCGGGGAGACCAAACTCCTGTACGGCGGCGACGACCCCAACTCCTTCTTCTTCTCCCGTCA CAAAAAGTACGGGGAGATATTCAAAACCCACATATTGGGCTGCCCCAGCGTCATGATTTCCAACCCGGACGCCGCCAGGGCCATACTCGTCACTCAGCCT CATCTCTTCAAGCCCACTTACCCTCCCAGCAAGGAGAGGCTCATCGGACGGTGGGCCATGTTCTTCCACCAGGGCGATTACCACTCCCGGCTCAAGCGCA TCGTCCATTCCACTCTCTTGCCTTCTTCCATTCGTCGCTCCATCGGAGATATCGAATCCCTCGCTCTCAACTTGCTCTCTTCCTGGGACACCACTGCTTC TTCCCTCAACACTCTAGACCAAATGAAACGGTTTGCATTTGACGTGGCAATGATGTCGGTGTTCGGGGAGAGGCTGGAGAGGAACGAAGAGGAAGATATC AGACGACTCTACGCCATGTTGGAGAAAGGCTATAATTCTATGCCACTCAATTTTCCGTTGACCAAGTATCACAACGCTGTCAAGGCGAGGGACACGTTGG ACAAGAAGCTGAAGGTGATGATGGAGAAGAGGATAAGGGAGAGTGGGGCCGGCAAAGGCGGCTACGGCGGAGGCTTGCTGGGAGCTATGCTGAGCAATAA CGACAGTAGTTCGGCGGATGACGGCGGCGGGTTTAGTGAAGCCCAAATCGCCGACAACATCATCGGACTCATCTTCGCGGCGAACGACACCACCGCCAGC GTGCTCACTTGGCTGCTCAAGTACTTGTATGAGAATCCCACCGAGTTACAAGCCGTCACGGAGGAGCAGGATAAAATTAAAGCGGAAATAAAGGCCGCAA AACGGCAGCTTACGTGGGAGGATACTAAGCGTATGCCGTTGACCAACAGGGTGATTCAAGAGACACTAAGAGCTGCAAGTGTACTCTTGTTCTTGTTTAG AGAGGCGGTGAAAGATGTCGAATTTGGTGGCTACATTATCCCGAAAGGTTGGAAGGTTCTTCCCGTCTTTCGCACCCTCCATCACTCTGCCGATTTTTTC CCTCATCCTGAGCGATTCGACTCTTCTCGCTTCCAGGTTCCACCGAGGCCAAACACGTACTTGCCATTCGGAACAGGACTCCACTCATGTCCAGGGAACG ATCTTGCCAGGCTCGAGATGCTGGTTTTCCTCCACCACCTTACAACCACTTACAAGTGGGAAGTTGTGGGAGAAGTTAGCCGCGGGGTGCAGTACGGCCC TTTCCCTGTGCCCAAAGGAGGCTTACCCATTAGAGTGACCCTTAGAAACTAA
AA sequence Show only first row Show all	>Lus10016515 pacid=23144881 polypeptide=Lus10016515 locus=Lus10016515.g ID=Lus10016515.BGIv1.0 annot-version=v1.0 MLNITPTPELLLLIITILPFLILLLRNRRRHRHRSSLPPGSMGWPHFGETKLLYGGDDPNSFFFSRHKKYGEIFKTHILGCPSVMISNPDAARAILVTQP HLFKPTYPPSKERLIGRWAMFFHQGDYHSRLKRIVHSTLLPSSIRRSIGDIESLALNLLSSWDTTASSLNTLDQMKRFAFDVAMMSVFGERLERNEEEDI RRLYAMLEKGYNSMPLNFPLTKYHNAVKARDTLDKKLKVMMEKRIRESGAGKGGYGGGLLGAMLSNNDSSSADDGGGFSEAQIADNIIGLIFAANDTTAS VLTWLLKYLYENPTELQAVTEEQDKIKAEIKAAKRQLTWEDTKRMPLTNRVIQETLRAASVLLFLFREAVKDVEFGGYIIPKGWKVLPVFRTLHHSADFF PHPERFDSSRFQVPPRPNTYLPFGTGLHSCPGNDLARLEMLVFLHHLTTTYKWEVVGEVSRGVQYGPFPVPKGGLPIRVTLRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Lus10016515 [exp]	0	1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042741 [exp]	1.4	0.8932
AT3G02125			unknown protein		Lus10013196 [exp]	4.9	0.8797
AT1G11050			Protein kinase superfamily pro...		Lus10028554 [exp]	6.2	0.8976
					Lus10005955 [exp]	8.9	0.8651
AT3G07840			Pectin lyase-like superfamily ...		Lus10043087 [exp]	11.2	0.8404
AT2G43590			Chitinase family protein (.1)		Lus10032794 [exp]	12.0	0.8535
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026623 [exp]	14.5	0.8169
AT1G18010			Major facilitator superfamily ...		Lus10009415 [exp]	15.2	0.7432
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031158 [exp]	18.2	0.8741
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	18.8	0.8292

Compare expression of checked genes

Lus10016515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.