Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72640 309 / 3e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G37660 43 / 0.0002 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000373 [exp] 363 / 4e-127 AT1G72640 207 / 8e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024383 [exp] 41 / 0.0007 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G063800 [exp] 367 / 5e-128 AT1G72640 348 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G086800 [exp] 43 / 0.0001 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016517 pacid=23144835 polypeptide=Lus10016517 locus=Lus10016517.g ID=Lus10016517.BGIv1.0 annot-version=v1.0 ATGGCGTTCATCTGTGTTCCCGCTCTTCTTCCTCCTTCAACGCTTTCTCTCCCAAGTTCCCGCAGCAACCCATTGTTCTCTTATGCCTTCTCCACTCCCC GAAACAGGATTCTTCCCTTTTGCTGCTCTGCCAAGAAGAAGATTGGCTTCTTTGATCAAATCCTCGACTACATCGAAGGAGGTCCCAAATTGAGGAAATG GTATGGGGCACCTCAACTCCTCCCCAAGGATGGATCTGCTTCAGAACAAGATGAGGATGATGAACTCTCAGCTGACAATGAAGTGAGAGATGCAATCCTA GTTGCTGATGGTGATTCTGAGCTTGGCCAGATGGTAATACTTCAATTGATCGTTAAACGTGCGCGAGTGAAGGCATTGGTGAAAGATAAGAGAGCTGCAA TGGAAGCTTTTGGGACTTATGTTGAGTCAATTGTGGGCGATGTGAAAAGCGAGCCATTTCTAAAGAAAGCTCTTCGAGGTGTTGGTGCCATTATAAGCCC CAACGAAGGGTTCTTTGCCAGTTTTGGGAGCTTCAAAGGATTACAGTTGTCTGTTTATAGAAGTAGCAGTGGAATTCAGTCCTTGATGACAAGCAATGCA AGAAAACTGGGAGAGCAAGATGAATCAGCAGTTATGGATTCAGGAGTTCCTTACACCATCGTCAGGACTGGGGCGTTACAGAATACATCCCGTGGAACCC AAGGATTCAGCTTCGTCAAGGCAAGTTTTGCAGGTTGTGCAGAGAAGGGAAGTCTGAGCAAAGAGGATGCTGCATTCATTTGTGTGGAAGCTCTAGAAGT TGTCCCACAAGGAGGAGGTTTTATCTTTGAGGTGACTAATGGGGGAGAGAAGGTATCAAATTGGAAAGAGTGTCTAACCAGACTCATGGAGGAAGGAGGG GGAGGAGGAGGAGCGCAGTAG
AA sequence Show only first row Show all	>Lus10016517 pacid=23144835 polypeptide=Lus10016517 locus=Lus10016517.g ID=Lus10016517.BGIv1.0 annot-version=v1.0 MAFICVPALLPPSTLSLPSSRSNPLFSYAFSTPRNRILPFCCSAKKKIGFFDQILDYIEGGPKLRKWYGAPQLLPKDGSASEQDEDDELSADNEVRDAIL VADGDSELGQMVILQLIVKRARVKALVKDKRAAMEAFGTYVESIVGDVKSEPFLKKALRGVGAIISPNEGFFASFGSFKGLQLSVYRSSSGIQSLMTSNA RKLGEQDESAVMDSGVPYTIVRTGALQNTSRGTQGFSFVKASFAGCAEKGSLSKEDAAFICVEALEVVPQGGGFIFEVTNGGEKVSNWKECLTRLMEEGG GGGGAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10016517 [exp]	0	1
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10012538 [exp]	3.2	0.9664
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10012086 [exp]	3.7	0.9669
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10025798 [exp]	6.9	0.9661
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10002084 [exp]	7.5	0.9647
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Lus10023320 [exp]	8.0	0.9455
AT2G30570		PSBW	photosystem II reaction center...		Lus10033862 [exp]	8.1	0.9542
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10007399 [exp]	8.8	0.9598
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10007627 [exp]	8.9	0.9620
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10011913 [exp]	11.8	0.9591
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10027871 [exp]	12.0	0.9182

Compare expression of checked genes

Lus10016517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.