Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59480 383 / 5e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G02230 310 / 4e-106 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT3G62040 282 / 8e-96 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G59490 278 / 5e-94 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G32150 223 / 2e-72 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040786 [exp] 568 / 0 AT5G59480 382 / 4e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004971 [exp] 465 / 2e-167 AT5G59480 392 / 1e-138 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10001574 [exp] 388 / 1e-134 AT5G59480 323 / 4e-109 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10024382 [exp] 327 / 1e-112 AT5G02230 394 / 5e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10010848 [exp] 322 / 1e-110 AT5G02230 394 / 7e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10028107 [exp] 293 / 2e-99 AT5G02230 369 / 4e-129 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10009256 [exp] 270 / 5e-91 AT3G62040 364 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10038016 [exp] 271 / 2e-90 AT3G62040 363 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10004914 [exp] 228 / 2e-74 AT2G32150 338 / 6e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G242300 [exp] 405 / 1e-143 AT5G59480 409 / 2e-145 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.006G086900 [exp] 339 / 2e-117 AT5G02230 402 / 4e-142 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.009G033500 [exp] 334 / 1e-114 AT5G59480 361 / 4e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G185300 [exp] 286 / 1e-96 AT3G62040 360 / 5e-126 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G110800 [exp] 285 / 3e-96 AT3G62040 356 / 8e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G089300 [exp] 229 / 2e-74 AT2G32150 317 / 9e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G151700 [exp] 223 / 2e-72 AT2G32150 319 / 2e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016518 pacid=23144809 polypeptide=Lus10016518 locus=Lus10016518.g ID=Lus10016518.BGIv1.0 annot-version=v1.0 ATGGCGCACGAAAACGGTGAAGAACAGCACAACGGTTTGAGCCAGACATACGATTGTCTCCTTTTCGATGTGGATGACACACTTTATCCATTGAGTTCTG GCCTGGCAGCACAAGTTGCCATCAACATTCAAGAGTATATGACTGAAAAGCTTGGCATCATGGAGAACAAAGTCCAGGAGCTGTGCCTGTCGCTTTACAA ATACTACGGCACTACAATGGCCGGCCTTCGGGCAGTTGGGTATAAATTTGATTATGACGACTTCCACAGTTTTGTACATGGAAGATTGCCTTACGAAGTC CTGAAGCCCGATCCTGTCCTTAAAAGCCTCTTACTAAGCGTGCCGATCCGAAAAATTTTCACCAATGCAGATAAGGCTCACGCGGAGAAGGTACTGAGCA AGCTAGGACTAGAGGATTGCTTTGAGCAGATACTTTGCTTCGAGACATTGAACGATTCCACCAAAGGAAACGATGCTGTAGATGACGAAGAAGCTGCTGA GGTCTTCGACATCAACGAGTACAGTGCTGCCCCAAACGCTGGCTTATCGCTTCCCAAAACGCCTGTGGTATGCAAACCTTTTGACGAAGCTTACGAAGAA GTTTTCAAGATTGCTTCCATCGACCCTCATCGCACGTTGTTTTTCGACGACAGCCTTCGCAATATCCAGACCGGGAAAAGAATGGGACTTCACACTGTCA GGGTGGGCACTTCGAATCGAGATGAAGGTGCTGACTACTCGTTGGAGAGTATCCATAACATTAAGGAAGCGTTTCCTGAGCTGTGGGATGAAGCCAAAGA TAAGCCAGAGGGGGTTCAATGTTCGACCGCGGTCGAAGCAGAAGTGCAGGCTTAG
AA sequence Show only first row Show all	>Lus10016518 pacid=23144809 polypeptide=Lus10016518 locus=Lus10016518.g ID=Lus10016518.BGIv1.0 annot-version=v1.0 MAHENGEEQHNGLSQTYDCLLFDVDDTLYPLSSGLAAQVAINIQEYMTEKLGIMENKVQELCLSLYKYYGTTMAGLRAVGYKFDYDDFHSFVHGRLPYEV LKPDPVLKSLLLSVPIRKIFTNADKAHAEKVLSKLGLEDCFEQILCFETLNDSTKGNDAVDDEEAAEVFDINEYSAAPNAGLSLPKTPVVCKPFDEAYEE VFKIASIDPHRTLFFDDSLRNIQTGKRMGLHTVRVGTSNRDEGADYSLESIHNIKEAFPELWDEAKDKPEGVQCSTAVEAEVQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59480			Haloacid dehalogenase-like hyd...		Lus10016518 [exp]	0	1
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030008 [exp]	1.7	0.9199
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030007 [exp]	3.7	0.8857
AT3G58640			Mitogen activated protein kina...		Lus10020708 [exp]	5.7	0.8844
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10016031 [exp]	8.1	0.8433
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	9.4	0.8821
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10012602 [exp]	10.2	0.8180
AT4G34760			SAUR-like auxin-responsive pro...		Lus10012189 [exp]	11.4	0.8287
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10033510 [exp]	13.2	0.8333
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10023499 [exp]	14.8	0.7729
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	19.0	0.8311

Compare expression of checked genes

Lus10016518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.