Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29060 69 / 7e-13 GRAS GRAS family transcription factor (.1) AT1G07530 67 / 2e-12 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT3G46600 62 / 9e-11 GRAS GRAS family transcription factor (.1.2.3) AT2G37650 60 / 9e-10 GRAS SCL9 GRAS family transcription factor (.1) AT5G59450 47 / 1e-05 GRAS SCL11 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040787 [exp] 172 / 3e-49 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040284 [exp] 66 / 9e-12 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 66 / 1e-11 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040790 [exp] 63 / 7e-11 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016521 [exp] 63 / 8e-11 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10010845 [exp] 62 / 1e-10 AT2G37650 571 / 0.0 GRAS family transcription factor (.1) Lus10040789 [exp] 42 / 0.0006 AT3G46600 432 / 4e-145 GRAS family transcription factor (.1.2.3) Lus10004968 [exp] 42 / 0.0007 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G033300 [exp] 96 / 9e-22 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G242100 [exp] 92 / 2e-20 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.009G033100 [exp] 74 / 2e-14 AT2G29060 506 / 1e-171 GRAS family transcription factor (.1) Potri.001G242000 [exp] 73 / 3e-14 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1) Potri.006G086600 [exp] 64 / 4e-11 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.001G241700 [exp] 62 / 2e-10 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032700 [exp] 61 / 2e-10 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032800 [exp] 61 / 2e-10 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241800 [exp] 59 / 2e-09 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.010G202300 [exp] 51 / 6e-07 AT1G07530 498 / 2e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016520 pacid=23144817 polypeptide=Lus10016520 locus=Lus10016520.g ID=Lus10016520.BGIv1.0 annot-version=v1.0 ATGGTGGCGGCTTGTCATTTCTTTCAGGAATTTGAATACCTTCGTAGAAGCTGCCGACTTCCCTTTTCAGCCATTTTTACTGTGGTTGACTGTTTTTTGT CGCTCTCCCGCCGTATCAGCGATAAGGTTCACACAACTGGCTTCCTCCTCCTTCCTTTTAAATACGCCTCCACCCTCAACTGCTTTCTCCTCCAGACACT TATCTTCTTCTCACTTCTTTATCTCTTCAAATTCTCTCTCGCCGCTTTCATTTCCATCATGAATTCTCTGCTGCAAGAAATCCCTAATTCCATCAACGCT TTCAAGTTCAAACACCCTTCAATCCCCTTCAACAATGGCTACAATCGATTCACAAACTCAGATCCTCCATCCGATTCGTCACCGTCTTCTTCCTCTTCAA CGTCGTCGTCGGCGCTATCTCCTTCTACATCCTCTGAAGGGGATTACCCGAACAACAATGCCGTTCTCAAGTACATCCACGACATGCTCATGGAGGAGGA TCTAGAAGGCAAGAGCTGTATGTACCAGGACTGTTTCGCTCTCCAAGCCGCTGAGAAGTCTCTCTACGATGCTCTCGGTCAAGAGTATCCTCAATCATCT TCTCCTCCCTGCCGCTCGAGTCAAACAACCCGGTCCGATCAGGTCCCCGATATCATAGGGAAGAAGAGAGGAGTAAAAAGAAATCGGCGGTTTCAAGAGA GGATGATGAGCCAGAGAATACGAAGATGCTTGACGAGGTCCTGCTCTGTTCGTGCAAGCAGGTGTGTACAACTCGCGGCCATGGCCATCATCATACGGAG AAGAAGAACGGACGAGGGAGGAAGAACAGTAATAACAAGAGAGGAGAAGTGGTGGATCTATGGACGTTGCTGA
AA sequence Show only first row Show all	>Lus10016520 pacid=23144817 polypeptide=Lus10016520 locus=Lus10016520.g ID=Lus10016520.BGIv1.0 annot-version=v1.0 MVAACHFFQEFEYLRRSCRLPFSAIFTVVDCFLSLSRRISDKVHTTGFLLLPFKYASTLNCFLLQTLIFFSLLYLFKFSLAAFISIMNSLLQEIPNSINA FKFKHPSIPFNNGYNRFTNSDPPSDSSPSSSSSTSSSALSPSTSSEGDYPNNNAVLKYIHDMLMEEDLEGKSCMYQDCFALQAAEKSLYDALGQEYPQSS SPPCRSSQTTRSDQVPDIIGKKRGVKRNRRFQERMMSQRIRRCLTRSCSVRASRCVQLAAMAIIIRRRRTDEGGRTVITREEKWWIYGRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29060	GRAS		GRAS family transcription fact...		Lus10016520 [exp]	0	1
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016519 [exp]	4.8	0.8082
AT2G46150			Late embryogenesis abundant (L...		Lus10036403 [exp]	8.2	0.8056
AT1G13250		GATL3	galacturonosyltransferase-like...		Lus10034274 [exp]	10.0	0.8032
AT2G22910		NAGS1	N-acetyl-l-glutamate synthase ...		Lus10012093 [exp]	11.4	0.7897
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10008126 [exp]	12.3	0.8074
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004724 [exp]	13.1	0.8070
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003394 [exp]	19.1	0.7296
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10014442 [exp]	19.2	0.7414
AT1G64530		NLP6	Plant regulator RWP-RK family ...		Lus10001811 [exp]	20.9	0.7133
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023034 [exp]	23.0	0.7550

Compare expression of checked genes

Lus10016520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.