Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37890 144 / 1e-37 Mitochondrial substrate carrier family protein (.1) AT3G53940 140 / 4e-36 Mitochondrial substrate carrier family protein (.1) AT3G55640 138 / 8e-36 Mitochondrial substrate carrier family protein (.1) AT3G51870 92 / 2e-19 Mitochondrial substrate carrier family protein (.1) AT5G51050 89 / 2e-18 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G01100 88 / 2e-18 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G01500 87 / 7e-18 TAAC thylakoid ATP/ADP carrier (.1) AT3G21390 79 / 2e-15 Mitochondrial substrate carrier family protein (.1) AT4G32400 79 / 3e-15 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT4G26180 75 / 2e-14 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016523 [exp] 780 / 0 AT2G37890 156 / 5e-44 Mitochondrial substrate carrier family protein (.1) Lus10036193 [exp] 650 / 0 AT2G37890 153 / 2e-43 Mitochondrial substrate carrier family protein (.1) Lus10007302 [exp] 458 / 3e-155 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10040816 [exp] 456 / 2e-154 ND / Lus10003349 [exp] 459 / 2e-152 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10013987 [exp] 454 / 9e-149 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10013986 [exp] 442 / 1e-147 ND 55 / 7e-08 Lus10040838 [exp] 423 / 2e-140 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10002769 [exp] 358 / 4e-119 AT1G15680 64 / 2e-11 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G091900 [exp] 147 / 7e-39 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 142 / 4e-37 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 142 / 4e-37 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 139 / 5e-36 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.011G004800 [exp] 104 / 2e-23 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.016G115400 [exp] 99 / 6e-22 AT5G01500 517 / 0.0 thylakoid ATP/ADP carrier (.1) Potri.014G095400 [exp] 95 / 8e-21 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G099800 [exp] 93 / 5e-20 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.002G168100 [exp] 91 / 2e-19 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 87 / 3e-18 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10016522 pacid=23144859 polypeptide=Lus10016522 locus=Lus10016522.g ID=Lus10016522.BGIv1.0 annot-version=v1.0 ATGGCGATCGAGAGCTGCATCTCGGATTGGGATGTGCCGCTAAGAGAACTCCGTCTCCGTTCCAGAAAACGACAACGAATCACAAACATGACGACGATCA ACGACTTGGGAACCGATCTTCTTGTAGAGATTCTGATCCGCCTCCCCAACCCCACATCCAGCTGCCGCTGTAAACTCGTTTGCAAGCGGTGGGACTCCCT CATCACAAGTCCTACCTTCAACCGTCGTTTCGTTTCTTACCATCAGACCATGAACCACCCACATATGCCGCTGGATCCATATGAGCTGAAATTTATCATC CTGAGCTTTCTCCCTCCCATGCCTTGTAGAGTTGGAAACGCTCTTAGAGTTTTGGATTGCAACAAGGACTTGGTTTTATGCGGCTTTTGGGACGCAGATT GCGACGATGGGGAACGTGGCAGAACGTACTTGGTCTGCAATCCATTTACCAAGCAGTGGATGGCTCTTCCTTTAGCGCCTAGGAAGCATGGTGGTTACGT ATCACTGGTCGCAAGGTTAGTCTGTGAACCCCGGAATTTTAATAAGCTTGATCTCGGAGATGAGCAAGAAGCATTTGTTTATTCTGAGTATCGCGTCGGC GTGGTTTGTATTTATCAAGTCGCTGCACCAGTGCCTGCTATAAAGTTAGACGTGTTTTGTTCCGAGTCTGGACAATGGACCAAGGAAGCTCTTTTCTCTG ATGATTCTGATGTTAAACTTGGAATAAAAGATGTAGTTTCATGCAACGGGGAGTTGCTTTGGAAGTATTGGAATCTGGATGTCTCGGTTGGACCTTCGGT GGCTGTGTTTAACCCTTTCCGCCTTGATAAGCGTCCCACTTCCATTGATTGTTCTGCATTCTATGTGTACCCGCGTTGGTTTATTTCCGGGTCACAAGGG GTGTTGCACGCAATTGCAATAGAAAATCGAACTGCACCTTTTCGTGCAAGCGTCTGGAGACTTGAACAAGACGGTTTCATCGCCGTCGATCTTATCGATA TGTTTCGTTTCTGTGAAGCGAACGCTGAGTATTTTAGTGAGTTGGATAAGGGGAAAAACCCACTTTCTTATGCATTGCTTGAAGGTTGGGACGATTGCCA TACAAGAGGGGGTTTTATGAGCATGTTGAAACAAGGCCGCGAGTTCTTGGTAAGGATATTGACTTTCGGCGGGGTCAATTTCGACCCGCTCTTCACCAAG TTCGTTGTCTACCCTCTAGCCGGCTCGATCATCGTTGTCCCCTTGGTCGAAACAGTCGTTGCGCCCCTCACCCGCTTCACCATTCTCAATCAGGTCAATT CCGATGAATGGAAGCCGATACAGAGTCAAATCGACAAGGTATTTCAACAACATGGAGGGTATAGGGCCGTGTTATTTTCGCTTGATTTCGGCGAATTGAA TACCGTATGGAAAAAGGTTGATGAGATTCTCAAAGAACAAGGAGGAAGTAAGGGATTATGGGATGGGAAATGGCTCTCAATTCTTCACCGTCTTGCTTTC TATGGAACCAACTTCTTCTCCTATTTCTTGTTTAAATCTCTACTCCAGGGGACCTTCGGGCCATTGTCTCTTAATCCTTTCACGGCTTGTATATGTGGTG GATTGTCTACATTGGTCGCCACCTTCGTTTCACATCCTCTAGATACTTTGAGAACCCGCGTAGAAGCTCAAACGAGTAGAGATCGTTACGGCGCTCGAGA TATGTACGACAACATTTGTAGAGACGGTGACTCTCTTTATGCTGGATTGTTACCTTCATTGTTGGGTAATATCCACTCCATGGCAGTCAATGTTGCTTTG TATGAATCACTCACAATGGCTTGGCGAGTTATAAGGCCAAAGGATTCTATATTCATGACCAGCCTTGTCTGCAGTAGCATTGCCAGCCTTGCGGCCTCGA CTGCAACGTACCCCATGGAAGTAGTGAAAAGGAGGATGCAAATGGAAGGGGTAGAAGAGTCGAATAACCTGTATGCGATACGCGAAATGTATAACGAAAT AGTGGAGAAAGATGGAGGGGGCGGATTGTATAGAGGCATTCAACCACATTGCTGGAAGGTGGTTGTTGACAATGCACTTTCGTTTCTCACTTACGAGATT GTTAGGATTCCTTGCAACTTAGCAACTATGGGCTTGTGCTTAATGTTTGACTTGCATCAGCTATACGAGTAG
AA sequence Show only first row Show all	>Lus10016522 pacid=23144859 polypeptide=Lus10016522 locus=Lus10016522.g ID=Lus10016522.BGIv1.0 annot-version=v1.0 MAIESCISDWDVPLRELRLRSRKRQRITNMTTINDLGTDLLVEILIRLPNPTSSCRCKLVCKRWDSLITSPTFNRRFVSYHQTMNHPHMPLDPYELKFII LSFLPPMPCRVGNALRVLDCNKDLVLCGFWDADCDDGERGRTYLVCNPFTKQWMALPLAPRKHGGYVSLVARLVCEPRNFNKLDLGDEQEAFVYSEYRVG VVCIYQVAAPVPAIKLDVFCSESGQWTKEALFSDDSDVKLGIKDVVSCNGELLWKYWNLDVSVGPSVAVFNPFRLDKRPTSIDCSAFYVYPRWFISGSQG VLHAIAIENRTAPFRASVWRLEQDGFIAVDLIDMFRFCEANAEYFSELDKGKNPLSYALLEGWDDCHTRGGFMSMLKQGREFLVRILTFGGVNFDPLFTK FVVYPLAGSIIVVPLVETVVAPLTRFTILNQVNSDEWKPIQSQIDKVFQQHGGYRAVLFSLDFGELNTVWKKVDEILKEQGGSKGLWDGKWLSILHRLAF YGTNFFSYFLFKSLLQGTFGPLSLNPFTACICGGLSTLVATFVSHPLDTLRTRVEAQTSRDRYGARDMYDNICRDGDSLYAGLLPSLLGNIHSMAVNVAL YESLTMAWRVIRPKDSIFMTSLVCSSIASLAASTATYPMEVVKRRMQMEGVEESNNLYAIREMYNEIVEKDGGGGLYRGIQPHCWKVVVDNALSFLTYEI VRIPCNLATMGLCLMFDLHQLYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37890			Mitochondrial substrate carrie...		Lus10016522 [exp]	0	1
AT1G31660			unknown protein		Lus10027134 [exp]	3.5	0.8616
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10037510 [exp]	3.5	0.8654
					Lus10027893 [exp]	3.9	0.8805
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000546 [exp]	4.2	0.8733
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002393 [exp]	7.0	0.8521
AT3G45070			P-loop containing nucleoside t...		Lus10003068 [exp]	9.8	0.8521
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022927 [exp]	12.8	0.7342
AT1G48320			Thioesterase superfamily prote...		Lus10036869 [exp]	13.9	0.8518
AT2G44820			unknown protein		Lus10026825 [exp]	13.9	0.8247
					Lus10015488 [exp]	16.0	0.8562

Compare expression of checked genes

Lus10016522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.