Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37890 144 / 2e-39 Mitochondrial substrate carrier family protein (.1) AT3G53940 140 / 1e-37 Mitochondrial substrate carrier family protein (.1) AT3G55640 139 / 1e-37 Mitochondrial substrate carrier family protein (.1) AT3G51870 91 / 4e-20 Mitochondrial substrate carrier family protein (.1) AT4G01100 88 / 4e-19 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 89 / 8e-19 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G01500 87 / 2e-18 TAAC thylakoid ATP/ADP carrier (.1) AT4G32400 79 / 5e-16 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G21390 79 / 6e-16 Mitochondrial substrate carrier family protein (.1) AT4G26180 76 / 6e-15 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016522 [exp] 780 / 0 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10036193 [exp] 652 / 0 AT2G37890 153 / 2e-43 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 141 / 5e-38 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 137 / 8e-37 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 135 / 9e-36 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10006265 [exp] 116 / 1e-29 AT2G37890 115 / 3e-30 Mitochondrial substrate carrier family protein (.1) Lus10024344 [exp] 115 / 3e-29 AT3G53940 417 / 4e-147 Mitochondrial substrate carrier family protein (.1) Lus10020583 [exp] 103 / 1e-23 AT2G37890 88 / 1e-18 Mitochondrial substrate carrier family protein (.1) Lus10032365 [exp] 93 / 1e-20 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G091900 [exp] 148 / 1e-40 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 143 / 5e-39 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 142 / 8e-39 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 139 / 1e-37 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.016G115400 [exp] 99 / 1e-22 AT5G01500 517 / 0.0 thylakoid ATP/ADP carrier (.1) Potri.014G095400 [exp] 96 / 1e-21 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G099800 [exp] 94 / 8e-21 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.002G168100 [exp] 91 / 3e-20 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 87 / 8e-19 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 87 / 8e-19 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10016523 pacid=23144785 polypeptide=Lus10016523 locus=Lus10016523.g ID=Lus10016523.BGIv1.0 annot-version=v1.0 ATGGATGAAATTTTTTCAGATTTGAAAACAGGTTTCATCGCCGTCGAGCTTATCGATATGTTTCGTTTTTGTGAAGCGAACGCTGAGTATTTTAGTGAGT TGGATAAGGGGAAAAACCCACCTTCTGATGCATTGCTTGAAGGTTGGGATCACTTGGTCGATTGCAATACAAGTGGGGATTTTATGAGCATGTTGAAACA AGGCCGCGAGTTCTTGGTAAGGATATTGACTTTCGGCGGGGTCAATTTCGACCCGCTCTTCACCAAGTTCGTTGTCTACCCTCTAGCCGGCTCGATCATC GTTGTCCCCTTGGTCGAAACAGTCGTTGCGCCCCTCACCCGCTTCACCATTCTCAATCAGGTCAATTCCGATGAATGGAAGCCGATACAGAGTCAAATCG ACAAGGTATTTCAACAACATGGAGGGTATAGGGCCGTGTTATTTTCGCTTGATTTCGGCGAATTGAATACCGTATGGAAAAAGGTTGATGAGATTCTCAA AGAACAAGGAGGAAGTAAGGGATTATGGGATGGGAAATGGCTCTCAATTCTTCACCGTCTTGCTTTCTATGGAACCAACTTCTTCTCCTATTTCTTGTTT AAATCTCTACTCCAGGGGACCTTCGGGCCATTGTCTCTTAATCCTTTCACGGCTTGTATATGTGGTGGATTGTCTACATTGGTCGCCACCTTCGTTTCAC ATCCTCTAGATACTTTGAGAACCCGTGTCGAAGCTCAAACGAGTAGAGATCGTTACGGCGCTCGAGATATGTACGACAACATTTGTAGAGACGGTGACTC TCTTTATGCTGGATTGTTACCTTCATTGTTGGGTAATATCCACTCCATGGCAGTCAATGTTGCTTTGTATGAATCACTCACAATGGCTTGGCGAGTTATA AGGCCAAAGGATTCTATATTCATGACCAGCCTTGTCTGCAGTAGCATTGCCAGCCTTGCGGCCTCGACTGCAACGTACCCCATGGAAGTAGTGAAAAGGA GGATGCAAATGGAAGGGGTAGAAGAGTCGAATAACCTGTATGCGATACGCGAAATGTATAACGAAATAGTGGAGAAAGATGGAGGGGGCGGATTGTATAG AGGCATTCAACCACATTGCTGGAAGGTGGTTGTTGACAATGCACTTTCGTTTCTCACTTACGAGATTGTTAGGATTCCTTGCAACTTAGCAACTATGGGC TTGTGCTTAATGTTTGACTTGCATCAGCTATACGAGTAG
AA sequence Show only first row Show all	>Lus10016523 pacid=23144785 polypeptide=Lus10016523 locus=Lus10016523.g ID=Lus10016523.BGIv1.0 annot-version=v1.0 MDEIFSDLKTGFIAVELIDMFRFCEANAEYFSELDKGKNPPSDALLEGWDHLVDCNTSGDFMSMLKQGREFLVRILTFGGVNFDPLFTKFVVYPLAGSII VVPLVETVVAPLTRFTILNQVNSDEWKPIQSQIDKVFQQHGGYRAVLFSLDFGELNTVWKKVDEILKEQGGSKGLWDGKWLSILHRLAFYGTNFFSYFLF KSLLQGTFGPLSLNPFTACICGGLSTLVATFVSHPLDTLRTRVEAQTSRDRYGARDMYDNICRDGDSLYAGLLPSLLGNIHSMAVNVALYESLTMAWRVI RPKDSIFMTSLVCSSIASLAASTATYPMEVVKRRMQMEGVEESNNLYAIREMYNEIVEKDGGGGLYRGIQPHCWKVVVDNALSFLTYEIVRIPCNLATMG LCLMFDLHQLYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37890			Mitochondrial substrate carrie...		Lus10016523 [exp]	0	1
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10031282 [exp]	1.0	0.7415
AT1G65810			P-loop containing nucleoside t...		Lus10035776 [exp]	8.2	0.6326
AT5G58890	MADS	AGL82	AGAMOUS-like 82 (.1)		Lus10020789 [exp]	8.5	0.6642
AT5G45275			Major facilitator superfamily ...		Lus10033280 [exp]	22.0	0.7302
AT1G53200			unknown protein		Lus10005971 [exp]	25.1	0.7116
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10004652 [exp]	28.8	0.7233
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10032973 [exp]	38.3	0.6896
AT2G37240			Thioredoxin superfamily protei...		Lus10030582 [exp]	50.4	0.6864
AT1G69930		ATGSTU11	glutathione S-transferase TAU ...		Lus10029518 [exp]	54.4	0.6657
AT1G69550			disease resistance protein (TI...		Lus10041559 [exp]	58.5	0.5520

Compare expression of checked genes

Lus10016523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.