Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24330 387 / 6e-136 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT5G09790 350 / 1e-120 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT3G59960 44 / 5e-05 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT3G03750 44 / 8e-05 SUVR3, SDG20 SET domain protein 20 (.1.2) AT2G44150 43 / 0.0001 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT4G30860 43 / 0.0002 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007782 [exp] 432 / 6e-155 AT5G24330 386 / 1e-135 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10040794 [exp] 268 / 6e-92 AT5G24330 221 / 5e-73 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10040793 [exp] 101 / 2e-27 AT5G24330 67 / 3e-15 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10038740 [exp] 50 / 9e-07 AT2G44150 399 / 5e-137 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10039118 [exp] 47 / 1e-05 AT2G44150 434 / 1e-152 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10003777 [exp] 42 / 0.0003 AT4G30860 451 / 9e-154 ASH1-related 3, SET domain group 4 (.1) Lus10028662 [exp] 42 / 0.0004 AT1G77300 774 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10000967 [exp] 42 / 0.0005 AT1G77300 748 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018300 [exp] 423 / 3e-150 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.015G009632 [exp] 415 / 5e-147 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.005G058000 [exp] 357 / 2e-123 AT5G09790 481 / 2e-170 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.007G109900 [exp] 356 / 3e-123 AT5G09790 473 / 1e-167 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.007G147200 [exp] 47 / 1e-05 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.017G000400 [exp] 45 / 2e-05 AT2G44150 471 / 5e-167 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.005G182100 [exp] 43 / 0.0002 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.013G064600 [exp] 42 / 0.0004 AT3G03750 258 / 1e-83 SET domain protein 20 (.1.2) Potri.002G079100 [exp] 42 / 0.0005 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10016526 pacid=23144822 polypeptide=Lus10016526 locus=Lus10016526.g ID=Lus10016526.BGIv1.0 annot-version=v1.0 ATGGTTCGAACAACGAGACGAGCCGCATTCAGTCGGAGGACCCAAGTTCCAGAACTCACCAAAATAATTGATTTCTTCCGCATTCAGAGAGCTCCGGAGC CAGCCCAGAGTCAGCTAAGCCAAGATTGTCAGAAGAAACGGAAAAGGTCAGGGAGTTTAGTGATGTCGAAAAAGAAGAGAAAGATGCTCCCTTTCAGTCC CAGTGATGATCCGGATAAAAGGTTAGAACAGATGAGATCACTAGCGACGGCATTGATAGCCTCGGGAACTCAATTCAGCGATCAGCTTTGTTACCAGCCA GGAATGGCTCCTCGCTCTGCTAATCGTGCCTTTTTTGAGAAGGGAGGAATGCAGGTGTTGTCGAAGGAAGACACTGAGACCTTAAAAACGTGCAAGAGAA TGATGGACAGAGGGGAGTGCCCGCCGCTCATGGTAGTATTCGATCCACTGGAAGGGTTCACAGTGGAGGCAGACAGATTGATCAAGGACTGGACAATCAT CACCGAGTACGTCGGAGACGTAGACTACTTGAGGAACAGGGAAAGCGACGACGGAGATAGCACAATGACGCTGCTTTCGGCTTCCGATCCTGGTAAGAGC CTGGTGGTATGTCCCTACAGGAATGGGAATATAGCAAGATTTATCAACGGCATCAACAACCACACTCCGGAAGGTAGGAGGAAGCAGAATTTGAAATGTG TGAGGTTTGCTGTTGATGGTGAGTGCCGGGTGTTGCTGATTGCGAATAGAGATATAGCTAAGGGGGAGAGGTTGTATTATGATTATAACGGTGATGAGCA TGAGTACCCCACTGAGCATTTTGTTTGA
AA sequence Show only first row Show all	>Lus10016526 pacid=23144822 polypeptide=Lus10016526 locus=Lus10016526.g ID=Lus10016526.BGIv1.0 annot-version=v1.0 MVRTTRRAAFSRRTQVPELTKIIDFFRIQRAPEPAQSQLSQDCQKKRKRSGSLVMSKKKRKMLPFSPSDDPDKRLEQMRSLATALIASGTQFSDQLCYQP GMAPRSANRAFFEKGGMQVLSKEDTETLKTCKRMMDRGECPPLMVVFDPLEGFTVEADRLIKDWTIITEYVGDVDYLRNRESDDGDSTMTLLSASDPGKS LVVCPYRNGNIARFINGINNHTPEGRRKQNLKCVRFAVDGECRVLLIANRDIAKGERLYYDYNGDEHEYPTEHFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	0	1
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10032439 [exp]	1.0	0.9515
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10040593 [exp]	3.2	0.9463
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10025559 [exp]	3.5	0.9385
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10012916 [exp]	3.7	0.9357
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	4.0	0.9331
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10010104 [exp]	4.5	0.9326
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Lus10008103 [exp]	5.5	0.9422
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10026219 [exp]	6.5	0.9254
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10040794 [exp]	8.1	0.8991
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005883 [exp]	8.5	0.9329

Compare expression of checked genes

Lus10016526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.