Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46590 328 / 2e-104 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT1G07540 298 / 4e-92 MYB TRFL2 TRF-like 2 (.1) AT5G13820 283 / 2e-86 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT5G59430 272 / 6e-83 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G12560 265 / 1e-79 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT3G53790 157 / 1e-42 MYB TRFL4 TRF-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040795 [exp] 1089 / 0 AT1G07540 400 / 1e-132 TRF-like 2 (.1) Lus10000947 [exp] 301 / 1e-92 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10002704 [exp] 300 / 2e-92 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10040285 [exp] 291 / 3e-89 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10024385 [exp] 258 / 9e-77 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10023406 [exp] 258 / 1e-76 AT5G13820 392 / 5e-128 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10010844 [exp] 256 / 9e-76 AT1G07540 308 / 7e-97 TRF-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G241600 [exp] 566 / 0 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.009G032000 [exp] 562 / 0 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.010G202400 [exp] 343 / 1e-108 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.008G057300 [exp] 319 / 2e-99 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.006G086500 [exp] 283 / 3e-86 AT1G07540 370 / 2e-119 TRF-like 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016527 pacid=23144903 polypeptide=Lus10016527 locus=Lus10016527.g ID=Lus10016527.BGIv1.0 annot-version=v1.0 ATGGTGTTGAAAAGGAGACTAGATTATGGACTCAATGGCTATGAATTCCCTTCTATACCCAGAGCAGCCAGATCCGTCAGGAGGAGGGTTCCTTTCAAGA AGCGGTTTCAAGAGAATCAAATGTCTGCATTTGACTTGTTGGCTGATGTAGCTGGAAAGTTATTGCTTGAGAATGATACTTCTCCCCCTTCTGGCAATGT TGCGCCTAAAGACGAAACCTTTGAAGCAAAAGCTTGCGATCAAGCAAGTCCGGGGAGAATTCACTGTCATAAAGGATCGTTGTATAGCGATAGTGGTGCT GATTTAGGATTAGCTTCTGCAGCAACAAATTCTGGTTGCAAAGAGAATGATGATAAGTCGGTGAATGGAGAAGTTACGGACGAAATAGGGATCACTTCTA CCAAGGTGGAAGTAGGCAACACTGAACATAGCGTAAAAGACGAGCCTTGTAAGTCTGAGAAGGAGGTGGTGAACGACATTGGTGCTGGTATGTTTACTTC AGAAGTTCCTTTGGCTTCTGATGATAAACAACATCACGAATTGAACAGTATAGACAGTACATTGTTGTGTGCACACCACATTCCTCATTGTTCTTATCCT GGAAATGAGGATGATAATGTAAATATAGTTAGTAGAGATGATGACGAAAACTCTTCTGGGTGTACTCACCCTATCACAAAAAGATTCTTAATGCCAACTC CGCGTATCGGAGACCGAAGAATTAGGAAAATTATGGCTTCCAGATGCTGGAAGGTCGCGTCAAGACGGAAGGATACAACCTTTTCTAACCGACGGGACTT GAAGCCCTTTTATCAGAATGGTAAGAACTACCATAGATTTGACAGATCTGAAAGGCTATATCCAATAAAAAAGAGGAGACGTTTTGGTTATAGCTGGCCA TCAAATTATGGAGGTGTAATTGATAGTGAGTTTGCATCTGAGTTTCCTCACAAGGGCTACAATGGATATTCTTCTGGTGTCATGAAACGGAAGTCATACC AACCTAGGGATCGTCATGTAAAGCTGAGGATAAAGTCATTTAAGGTGCCAGAGCTTTTCGTTGAGATTCCAGAGAGCGCCACCATTGGTTCATTGAAGAG GACCGTCGTGGATGCTCTCAGAGTATTTCTTGGAGGCCGAGTGCATGTTGATGTTCATCTTCAGGGGAGGAAGGTTAGGGATGACCATCAGACATTATCG CAGACTGGAATTTCTCACAGTAATCATTTGGATGCTTTGGGGTTTAGCCTGGAGCCAAACTCCTCGCCGGATACTGGTTCTCTTTGCTCCGTAGAATTTC CTTCTACTTTTTCCTGTCCAAAACCTGAGCCACTTAGCAGTTATCCACGGACTCCGATCGTGGTACATCAGAGCACCCATGCTGCTTCTCCTAAGCCTCA CACAGTAAATCTGTGGAACTTGATCGAAAGTGACCATGACTCAGACCCCTCCCCTATAGACACAAGTGATCCGAAACTACCATTGGCTGTACCACCATCA ATAGACATGGATGCATTAGCGATGGTTCCAGCCAACCGGAAATCCAAGCGTGCTGAGATGGCTCAGCGCCGAATTCGTCGACCTTTCTCTGTTGCTGAAG TTGAAGCGTTGGTTCAAGCAGTTGAAGAACTGGGTACTGGAAGATGGCGTGATGTCAAGCTCAGAGCTTTCGACCATGCAAAGCATCGAACTTACGTCGA TTTGAAGGCAAATTTGTGTCAGCAGGCTAATGACAAGCTGTCCAATATACAGTCTCACGTGGATAAGTGGAAAACACTGGTGCACACAGCAAGAATATCC CCACAACAAAGGAGGGGAGAGCCAGTACCACAGGAGCTGCTGGATAGGGTTCTAAATGCTCATGCTTATTGGTCCCACCAGCTAGCCTTTCAACTCTCAG AGTCTTCTACTACTCCTCTGAAAGCTCTTCCTTTGGAAAGTGGGCTATAA
AA sequence Show only first row Show all	>Lus10016527 pacid=23144903 polypeptide=Lus10016527 locus=Lus10016527.g ID=Lus10016527.BGIv1.0 annot-version=v1.0 MVLKRRLDYGLNGYEFPSIPRAARSVRRRVPFKKRFQENQMSAFDLLADVAGKLLLENDTSPPSGNVAPKDETFEAKACDQASPGRIHCHKGSLYSDSGA DLGLASAATNSGCKENDDKSVNGEVTDEIGITSTKVEVGNTEHSVKDEPCKSEKEVVNDIGAGMFTSEVPLASDDKQHHELNSIDSTLLCAHHIPHCSYP GNEDDNVNIVSRDDDENSSGCTHPITKRFLMPTPRIGDRRIRKIMASRCWKVASRRKDTTFSNRRDLKPFYQNGKNYHRFDRSERLYPIKKRRRFGYSWP SNYGGVIDSEFASEFPHKGYNGYSSGVMKRKSYQPRDRHVKLRIKSFKVPELFVEIPESATIGSLKRTVVDALRVFLGGRVHVDVHLQGRKVRDDHQTLS QTGISHSNHLDALGFSLEPNSSPDTGSLCSVEFPSTFSCPKPEPLSSYPRTPIVVHQSTHAASPKPHTVNLWNLIESDHDSDPSPIDTSDPKLPLAVPPS IDMDALAMVPANRKSKRAEMAQRRIRRPFSVAEVEALVQAVEELGTGRWRDVKLRAFDHAKHRTYVDLKANLCQQANDKLSNIQSHVDKWKTLVHTARIS PQQRRGEPVPQELLDRVLNAHAYWSHQLAFQLSESSTTPLKALPLESGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46590		ATTRP2, TRFL1	TRF-like 1 (.1.2.3)		Lus10016527 [exp]	0	1
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10020162 [exp]	1.0	0.9489
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10041237 [exp]	2.4	0.9417
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10021948 [exp]	3.2	0.9427
AT4G23895			Pleckstrin homology (PH) domai...		Lus10023081 [exp]	6.0	0.9221
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	6.6	0.9348
AT5G67170			SEC-C motif-containing protein...		Lus10006255 [exp]	7.5	0.9109
AT5G01010			unknown protein		Lus10042743 [exp]	8.4	0.9185
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10015186 [exp]	8.9	0.9212
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10021624 [exp]	9.2	0.9242
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10028744 [exp]	10.2	0.9050

Compare expression of checked genes

Lus10016527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.