Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26250 867 / 0 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT1G19440 629 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G26640 617 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT2G16280 611 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G04220 593 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G01120 581 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G68530 576 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT4G34510 563 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G25450 551 / 0 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT5G43760 544 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040796 [exp] 1087 / 0 AT2G26250 861 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10009799 [exp] 905 / 0 AT2G26250 797 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10026345 [exp] 618 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 618 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10001657 [exp] 603 / 0 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10002691 [exp] 601 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10002533 [exp] 599 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10019446 [exp] 597 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10030209 [exp] 597 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218000 [exp] 932 / 0 AT2G26250 896 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.006G080400 [exp] 640 / 0 AT2G26250 575 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.009G116700 [exp] 627 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.018G032200 [exp] 622 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.004G155600 [exp] 621 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.006G249200 [exp] 617 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 609 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.014G196200 [exp] 604 / 0 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.010G079500 [exp] 592 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 589 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10016528 pacid=23144836 polypeptide=Lus10016528 locus=Lus10016528.g ID=Lus10016528.BGIv1.0 annot-version=v1.0 ATGGGTAGTGAAGGAGATCTCCTTTCCACAGAGATTGTCAACCGTGGCATAGAATCGTCAGGCCCTAATGCTGGCTCCTTGACATTCTCTGTTAGGGTAA GGAGGAGGTTGCCCGATTTCCTCCAGTCGGTGAACCTCAAGTATGTGAAGTTGGGTTACCATTACCTAATCAATCATGCCATCTATTTGGCAACCATTCC TGTTCTGGTGCTGGTGTTCAGTGCTGAAGTAGGAACCCTCAACAGGGAAGATCTCTGGAAAAGGCTGTGGGAAGATGCTCGCTATGATCTTGCTACTGTC CTTGCTTTCTTTGGCGTCTTTGTCTTCACACTCTCTATCTACTTTATGTCACGCCCCAGATCTATTTACCTCATTGATTTTGCCTGCTATAAGCCTCATG ACGATCTCAAGGTGACCAAGAATGAGTTCATGGATTTGGCCCGCAGGACAGGCAAGTTCGATGAAGCAAGCCTTGAATTCCAGAGGAGAATTTTGTATTC CTCAGGCATCGGAGACGAGACTTACATTCCCAAAACCGTAATGTCTCAGGAGAAGTGTTCAACAATGAAAGAAGGCCGGGCAGAAGCCTCGATGGTGATG TTTGGTGCTCTGGACGAGCTGTTTGAGAAAACCGGTATCCGCCCCAAGGACATTGGTGTCCTGGTGGTAAACTGCAGCATCTTTAACCCAACCCCGTCGC TATCCGCCATGATTATCAATCACTACAAGATGAGAGGTAACATTTTGAGCTACAATCTGGGAGGCATGGGCTGCAGTGCTGGGATTATAGCCGTGGACCT GGCCCGCGACATGCTTCAAGCCAACCCGAATAACTACGCCGTGGTGGTTAGTACTGAGATGGTCGGCTACAACTGGTACTCCGGTAAGGACCGTTCCATG CTCATCCCTAACTGCTTCTTCAGAATGGGTTGCTCTGCAATTCTCATGTCAAACAGGAGGCGCGATTACACGCGTTCCAAGTATCGTCTCGAACACATAG TCCGAACCCACAAAGGTGCTGATGATCGCAGTTTCAGGTGCATTTACCAAGAAGAAGACGAAGAAAAGAACAAGGGACTAAAGGTGAGCAAGCAGCTTGT GGAAATAGGAGGGGAAGCCTTGAAAGCCAACATCACAACTCTAGGTCCCTTAGTGCTACCATTCTCAGAGCAAGTCCTCTTCTTTGCCACCCTCGTCAAA AGGCACCTCTTTGGAAAAACCAAGACCAATAAACCCGGCACCGCAGCAGCAGCATCCTCAAAGCCATACATTCCAAACTACAAGCTGGCATTCGAGCACT TCTGTGTCCACGCAGCGAGCAAGACCGTGCTGGACGAACTTCAGAGGAACCTTGAACTGAGCGACAAGAACGTCGAAGCGTCCAGAATGACTCTGCACAG GTTTGGCAACACTTCCAGCAGCAGCATATGGTATGAGCTGGCTTACTTGGAAGCGAAAGAGATGGTGAAGAAAGGGGACCGGGTTTGGCAGCTTTCGTTC GGTTCCGGGTTCAAGTGCAACAGCCTGGTGTGGAAGGCAACAAGACGCTCGAGGAAGCCTTCCACGGGGAACCCATGGCTGGATTGA
AA sequence Show only first row Show all	>Lus10016528 pacid=23144836 polypeptide=Lus10016528 locus=Lus10016528.g ID=Lus10016528.BGIv1.0 annot-version=v1.0 MGSEGDLLSTEIVNRGIESSGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHAIYLATIPVLVLVFSAEVGTLNREDLWKRLWEDARYDLATV LAFFGVFVFTLSIYFMSRPRSIYLIDFACYKPHDDLKVTKNEFMDLARRTGKFDEASLEFQRRILYSSGIGDETYIPKTVMSQEKCSTMKEGRAEASMVM FGALDELFEKTGIRPKDIGVLVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGIIAVDLARDMLQANPNNYAVVVSTEMVGYNWYSGKDRSM LIPNCFFRMGCSAILMSNRRRDYTRSKYRLEHIVRTHKGADDRSFRCIYQEEDEEKNKGLKVSKQLVEIGGEALKANITTLGPLVLPFSEQVLFFATLVK RHLFGKTKTNKPGTAAAASSKPYIPNYKLAFEHFCVHAASKTVLDELQRNLELSDKNVEASRMTLHRFGNTSSSSIWYELAYLEAKEMVKKGDRVWQLSF GSGFKCNSLVWKATRRSRKPSTGNPWLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10016528 [exp]	0	1
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10040796 [exp]	1.0	0.9765
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008897 [exp]	2.4	0.8991
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10040873 [exp]	4.0	0.9003
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10020372 [exp]	5.3	0.8608
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	6.9	0.8711
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10039906 [exp]	7.1	0.8323
AT1G32780			GroES-like zinc-binding dehydr...		Lus10033241 [exp]	9.6	0.8974
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10027727 [exp]	9.8	0.8166
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10022196 [exp]	12.6	0.8558
					Lus10010299 [exp]	13.5	0.8394

Compare expression of checked genes

Lus10016528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.