Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21970 518 / 0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 175 / 3e-49 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G79120 143 / 2e-38 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 139 / 1e-36 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G33495 135 / 1e-35 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 135 / 2e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G08940 134 / 6e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G62990 133 / 4e-34 EMB1692 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 130 / 1e-33 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 127 / 9e-33 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040797 [exp] 681 / 0 AT5G21970 487 / 3e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005945 [exp] 181 / 1e-51 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 181 / 2e-51 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10003062 [exp] 139 / 2e-36 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10034086 [exp] 138 / 3e-36 AT2G31290 559 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000096 [exp] 134 / 9e-35 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10008711 [exp] 132 / 2e-34 AT4G08940 538 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 132 / 3e-34 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10005755 [exp] 132 / 5e-34 AT4G33495 608 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218100 [exp] 540 / 0 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 174 / 1e-48 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 173 / 2e-48 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.001G439100 [exp] 151 / 3e-41 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 142 / 8e-38 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G220000 [exp] 139 / 1e-36 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G097900 [exp] 135 / 1e-35 AT4G08940 492 / 2e-174 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 135 / 3e-35 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.015G141700 [exp] 134 / 1e-34 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.016G030300 [exp] 127 / 3e-32 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10016529 pacid=23144858 polypeptide=Lus10016529 locus=Lus10016529.g ID=Lus10016529.BGIv1.0 annot-version=v1.0 ATGGGTACCCGGTTCTTGCGGAGCATGAGTGAACTCCAAGTGTTTGTGTATATACCTCAGAGAAATGGCGGCAGCCAACCGTTTCAGAGCAGGTTCATGA CGACGAGCAAGCGAGTTCAGGACAGGAGCAGGATGAAGAGAGTACACGATCTTGAGATCGCGACGGAGAAGTGGAAAATCGTGTCCAAAGTGATGGCAGT TATGGAGATTTTGAAGCAGGAGCCGGAGATGATCATCCCGGTCAGGAATCTAGAACAGCATCGCCAGCGGCTCAACCTACCTAAGCCGAATAGAATCTCT GATTTCCTCCGCAAGTCTCCCAAGGTTTTTGAACTGTACAAGGACGAGAGAGGGCTGACGTGGTGTGGAATGACGGGACAAGCTGAAGAATTAGTGGAAG AACATGATAAGCTAATTGAAGAGCATTCGGATAAAGCTGCTGAGTATGTTACTAGGTGTCTTATGATGTCTGTTGACAAGCGGCTGCCATTGGACAAAAT CGCCACCTTCAGAAGGGATTTTGGTCTGCGGATTGATTTCAGAAACGATTGGGTGAATAAGTATCCTGAACTGTTTAAGGTCGTCAAGTCTGCTGATGGG GTTGACTACTTGGAGCTGGTGTCTTGGAACCCTGCTTGGGCCATTACTGAGTTAGAGAAGAAGGTGTTGGGGATAAATGAAGCTACTGGCCACGAACCTG GCATGCTTTCGTTGGCATTTCCTTTGAAGTTCCCTGCCAAATTTAAAAAGGTGTACAGGATTGGAGGGAAGCTTGAGCATTTCCAGAAATTGTCTTATCT GTCACCTTACGGAGATTCTTCCAAGGAGGGGTTGTTAACACCTGGGTCGCGAGAATTTGACAAGAGGGCAGTGGCTATAATGCATGAGCTACTTAGCTTT ACAGTTGAGAAGAGGCTAGTTACTGATCACCTTACTCACTTTCGGAGGGAATTTGTGATGCCACAAAAGTTGATGAGAATTCTGTTGAAACATTTTGGGA TCTTTTATGTGTCCGAGAGAGGGAAGAGGTTCAGTGCGTTCTTGACTGAAGCATATGAAGGGCCAGAACTGATTGATAAGTGTGCGTTGGTCCTTTGGAA GGAAAAACTCTTGCGTGTTGTTGGTTACAGAGGAAGGAAGGGGAGGGTTCCTACTTTCAGCGATTCGTCAGACATGGAGACTCTTGATACGGCAGGAAAT GACTCTGAGGACACAGTAGAGGATGAAGAGGAATTACCAGAGGATGAGGAGGTAATGGATAGTTTGCTGGATTCTTCGGTTGCACAAAAATAA
AA sequence Show only first row Show all	>Lus10016529 pacid=23144858 polypeptide=Lus10016529 locus=Lus10016529.g ID=Lus10016529.BGIv1.0 annot-version=v1.0 MGTRFLRSMSELQVFVYIPQRNGGSQPFQSRFMTTSKRVQDRSRMKRVHDLEIATEKWKIVSKVMAVMEILKQEPEMIIPVRNLEQHRQRLNLPKPNRIS DFLRKSPKVFELYKDERGLTWCGMTGQAEELVEEHDKLIEEHSDKAAEYVTRCLMMSVDKRLPLDKIATFRRDFGLRIDFRNDWVNKYPELFKVVKSADG VDYLELVSWNPAWAITELEKKVLGINEATGHEPGMLSLAFPLKFPAKFKKVYRIGGKLEHFQKLSYLSPYGDSSKEGLLTPGSREFDKRAVAIMHELLSF TVEKRLVTDHLTHFRREFVMPQKLMRILLKHFGIFYVSERGKRFSAFLTEAYEGPELIDKCALVLWKEKLLRVVGYRGRKGRVPTFSDSSDMETLDTAGN DSEDTVEDEEELPEDEEVMDSLLDSSVAQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21970			Ubiquitin carboxyl-terminal hy...		Lus10016529 [exp]	0	1
AT5G21970			Ubiquitin carboxyl-terminal hy...		Lus10040797 [exp]	4.4	0.8294
AT2G15695			Protein of unknown function DU...		Lus10019874 [exp]	12.2	0.8078
AT1G15670			Galactose oxidase/kelch repeat...		Lus10017300 [exp]	23.5	0.8021
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10019288 [exp]	24.1	0.8114
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10020376 [exp]	25.0	0.7935
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030853 [exp]	27.0	0.8050
					Lus10025480 [exp]	27.5	0.7208
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10014310 [exp]	28.1	0.7967
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	28.1	0.7968
AT2G15695			Protein of unknown function DU...		Lus10014042 [exp]	33.2	0.7938

Compare expression of checked genes

Lus10016529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.