Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59400 311 / 2e-106 unknown protein AT4G11960 69 / 3e-13 PGRL1B, PGR5-LIKE B PGR5-like B (.1.2) AT4G22890 66 / 6e-12 PGR5-LIKEA, PGR5-LIKE A PGR5-LIKE A (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040799 [exp] 591 / 0 AT5G59400 316 / 3e-108 unknown protein Lus10014135 [exp] 66 / 3e-12 AT4G22890 465 / 3e-166 PGR5-LIKE A (.1.2.3.4.5) Lus10006710 [exp] 65 / 1e-11 AT4G22890 468 / 2e-167 PGR5-LIKE A (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G241400 [exp] 398 / 9e-141 AT5G59400 357 / 2e-124 unknown protein Potri.009G032300 [exp] 375 / 9e-132 AT5G59400 343 / 8e-119 unknown protein Potri.003G119200 [exp] 68 / 9e-13 AT4G22890 410 / 1e-144 PGR5-LIKE A (.1.2.3.4.5) Potri.001G113000 [exp] 62 / 1e-10 AT4G22890 392 / 4e-137 PGR5-LIKE A (.1.2.3.4.5)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016531 pacid=23144861 polypeptide=Lus10016531 locus=Lus10016531.g ID=Lus10016531.BGIv1.0 annot-version=v1.0 ATGGCTGGCGCGTGCTTCTCCACTGCGAGGCGATACACCTTTCGTCCGACCGCCGTCGTCGAGATTACTTCTAGGGTTGGCTCCCGGACTATAGCTTCCT TGCCGGTCCGAATCTCGGCCGGAGGAAATGCAGCTATGGCGACTTGCTGCAAGGCCGAGGGCCCGTCTTGTATCTACGTTGGACCTATTGAGACGGCGAG TAAAGAAACTCTGGAAGCTCTGTATCGTCAGGCACGGGAATCATATTACAGTGGCTCGCCTTTGATAGTGGATGACATGTTTGATAGAGTAGAGTTGAAG CTCCGGTGGTACGGTTCGAAATCCGTTGTCAAGTATCCTCGCTGCAGCCTTAAACGACAGTCGACATACTCGGATGCTGAGGAAGATATCTCTCAGGCCT TCGCATTAGCAAGCATATGGTCGCTTTTTCTTACAATCGGAAGCTGTATTGCTGCTTGCCCCATAATCTACGCCATCGGCATAGCTTATCAAGATGCGTT TGGTCCACCAATTTCACCGGGCGGTCAACAGACTGTGATAAAGTTCCTTTCCTCTGCCAATTTCTTTCTGTTCATGGCCGTGGGATACCTAATTGGCTAT CCAATTGTGTCAGCCTCAATGAAAACGCTTAATGGACTGTGGAGGAATGATTTGGTTGCACTCAAGGGGGCTTGTCCAGACTGTGGTGAAGAGGTATTTG CATTCGTGAAAACGAACCAGTCCAAAGACTCCTCCCCACATAGAGCAAGTTGCCATGTATGTGAAAGTGTGCTCGAGTTTCGGACAAACGTTGAGCAAAC CAAGTCGACACTGGGAAGGCAATGGGTTTATGGCCGTATCTATCTCATGTCGAAACGGAGAAGAAGATGGAACAAGATATCGAATTAG
AA sequence Show only first row Show all	>Lus10016531 pacid=23144861 polypeptide=Lus10016531 locus=Lus10016531.g ID=Lus10016531.BGIv1.0 annot-version=v1.0 MAGACFSTARRYTFRPTAVVEITSRVGSRTIASLPVRISAGGNAAMATCCKAEGPSCIYVGPIETASKETLEALYRQARESYYSGSPLIVDDMFDRVELK LRWYGSKSVVKYPRCSLKRQSTYSDAEEDISQAFALASIWSLFLTIGSCIAACPIIYAIGIAYQDAFGPPISPGGQQTVIKFLSSANFFLFMAVGYLIGY PIVSASMKTLNGLWRNDLVALKGACPDCGEEVFAFVKTNQSKDSSPHRASCHVCESVLEFRTNVEQTKSTLGRQWVYGRIYLMSKRRRRWNKISN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59400			unknown protein		Lus10016531 [exp]	0	1
AT5G59400			unknown protein		Lus10040799 [exp]	1.0	0.9167
AT1G75100		JAC1	J-domain protein required for ...		Lus10018811 [exp]	4.9	0.8648
AT3G18500			DNAse I-like superfamily prote...		Lus10014775 [exp]	7.3	0.8698
AT1G10310			NAD(P)-binding Rossmann-fold s...		Lus10042410 [exp]	10.4	0.8404
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	10.6	0.8580
AT3G44020			thylakoid lumenal P17.1 protei...		Lus10019382 [exp]	11.0	0.8716
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008039 [exp]	11.1	0.8200
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012127 [exp]	12.2	0.8619
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10015007 [exp]	12.4	0.8366
AT5G27560			Domain of unknown function (DU...		Lus10029929 [exp]	15.2	0.8572

Compare expression of checked genes

Lus10016531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.