Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20370 546 / 0 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G29040 543 / 0 Exostosin family protein (.1) AT4G13990 501 / 3e-174 Exostosin family protein (.1) AT2G32750 498 / 4e-173 Exostosin family protein (.1) AT2G32740 436 / 2e-149 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT2G31990 422 / 1e-143 Exostosin family protein (.1) AT5G62220 365 / 7e-121 ATGT18 glycosyltransferase 18 (.1) AT5G41250 357 / 4e-117 Exostosin family protein (.1) AT1G63450 345 / 2e-111 RHS8 root hair specific 8 (.1) AT1G68470 334 / 9e-110 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004967 [exp] 732 / 0 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10001578 [exp] 718 / 0 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10024961 [exp] 552 / 0 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10022862 [exp] 548 / 0 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10006694 [exp] 513 / 4e-178 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10001028 [exp] 478 / 6e-165 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10010677 [exp] 473 / 2e-163 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10007426 [exp] 473 / 2e-163 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10007037 [exp] 452 / 9e-156 AT4G13990 540 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G032500 [exp] 620 / 0 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 560 / 0 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.014G147800 [exp] 533 / 0 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 530 / 0 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.012G130700 [exp] 354 / 1e-116 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.001G381900 [exp] 344 / 3e-113 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.001G382200 [exp] 343 / 5e-113 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.015G132600 [exp] 340 / 4e-111 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G105300 [exp] 341 / 9e-111 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.001G120800 [exp] 293 / 1e-93 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10016532 pacid=23144902 polypeptide=Lus10016532 locus=Lus10016532.g ID=Lus10016532.BGIv1.0 annot-version=v1.0 ATGGACATGCCTGTAATCGCCACTACTCGTATACGAATCTGGTACTTCATCTTGGCCTTCTTCGTTCTATGGATCTTCCTCCTCGCCGCCTTCTTCTCCG ACAACACAGAGGTCGTCGTTGTCGAACCCAATCCTGCGAATGCCACTACCGTCGATAGGTTCTTCGTCGACGGAGGATGGGATAAGTACGTACAACAGGC TGAAGACATCCCGGAGGAGAAAATCGTCCGCAGAATTGATCCCTGCTCCGGGAAGTACATATACGTTCACGAAATTCCGTCCGAATTCAATTCGGACATT CTCGAACAATGCCGCTCGCTGAACCCGTGGATGGACATGTGCCCGTTTATCACAAACATGGGCCTCGGTCCGAAGCTTCGGAGCTCCGAGAAGGTTGTTT CGAATTCGGGATGGTTCGAGACGAACCAATTCGTTCTGGAAGTGATTTTCCACAACCGGATGAAGCAGTATAAGTGCTTGACTAACGATTCGTCCAAAGC TTCAGCGATTTTTGTCCCGTACTATGCCGGACTCGATGTGGCTCGGTACCTGTGGAGTAATAACAGCACTGCTTCAATTCGAGACCGGTACTCGATCGAG CTGATTAATTGGATTCGAGATAAGCCGGAGTGGAGGAGAATGTGGGGGAGAGACCATTTCCTTGTCGCCGGAAGAATCAGTTGGGATTTCAGAAGAGTGA CGGATAAGGATGAACATTGGGGGAACAAGCTGATGGTGCTTCCTGAAGCCAAGAACATGACGATGTTAACCATCGAATCGAGTCCGTGGAACGAGAACGA TTTCGGAATCCCTTACCCGACCGATTTCCACCCGGCCAGCGATTCTCAGGTTTTTTATTGGCAGCGCAGGATGAGCAGGATCAGGAGGAGGACTCTGTTC TCCTTCGCAGGAGCTCCGCGGCCAAATCTGAAGAATTCGATCCGGAACGAGATTATCGAGCAGTGCAAATCCAATAGAAGGAGGTGTCAGCTGCTCGGAT GTCACCCGAGTTCGAAGAAATGCAACGATCCGAGCAATCTGATGAGGATGTTTCAGAATTCTGTATTCTGCCTGCAGCCTCCAGGGGACTCGTACACTCG GCGATCGACTTTCGATTCGATTCTGGCCGGATGTATTCCGGTCTTCTTCCATCCTGGTTCCGCTTATATCCAATACTTGTGGCATTTCCCCAAGGATTAT ACAAAATACTCGGTGTTCATACCGGAGAACGAGGTTAAAGAAGGGAAGGCGAGCATCGAGACGATACTGTCGAGGATTCCCAAGCGGAGGGTTGCGGAGA TGAGGGAGGAGGTGATTCGGTTGATTCCGACGGTGGTGTATGCTGATCCGCGGTCGAGATTAGAGACGTTGAAGGACGCGTTTGATCGGACGGTGAGTGG GGTTTTGAAGAGGGTTGAGAGGGCTCGGAAGGCGATGGAGGTAGGGAAGAATTTGACTGTGGCGTCAGAGAAGGAAGAGGAGAGTAACTGGAAAAAGGCG ACGGCGGTCGGGGATGTTGTGCCGCATCCTTGGGATCATTTTTTTGTTAGGGAGGATGAGTATAAACCCTAG
AA sequence Show only first row Show all	>Lus10016532 pacid=23144902 polypeptide=Lus10016532 locus=Lus10016532.g ID=Lus10016532.BGIv1.0 annot-version=v1.0 MDMPVIATTRIRIWYFILAFFVLWIFLLAAFFSDNTEVVVVEPNPANATTVDRFFVDGGWDKYVQQAEDIPEEKIVRRIDPCSGKYIYVHEIPSEFNSDI LEQCRSLNPWMDMCPFITNMGLGPKLRSSEKVVSNSGWFETNQFVLEVIFHNRMKQYKCLTNDSSKASAIFVPYYAGLDVARYLWSNNSTASIRDRYSIE LINWIRDKPEWRRMWGRDHFLVAGRISWDFRRVTDKDEHWGNKLMVLPEAKNMTMLTIESSPWNENDFGIPYPTDFHPASDSQVFYWQRRMSRIRRRTLF SFAGAPRPNLKNSIRNEIIEQCKSNRRRCQLLGCHPSSKKCNDPSNLMRMFQNSVFCLQPPGDSYTRRSTFDSILAGCIPVFFHPGSAYIQYLWHFPKDY TKYSVFIPENEVKEGKASIETILSRIPKRRVAEMREEVIRLIPTVVYADPRSRLETLKDAFDRTVSGVLKRVERARKAMEVGKNLTVASEKEEESNWKKA TAVGDVVPHPWDHFFVREDEYKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29040			Exostosin family protein (.1)		Lus10016532 [exp]	0	1
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10040652 [exp]	3.5	0.8983
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10021664 [exp]	6.7	0.8853
AT1G21130		IGMT4	indole glucosinolate O-methylt...		Lus10030187 [exp]	7.3	0.9215
AT5G51105			Protein of unknown function (D...		Lus10043285 [exp]	10.3	0.9145
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	12.1	0.9007
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10017677 [exp]	17.0	0.8463
AT5G59190			subtilase family protein (.1)		Lus10040254 [exp]	17.5	0.8974
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009630 [exp]	19.1	0.8974
					Lus10011605 [exp]	20.7	0.8974
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10034372 [exp]	21.0	0.7307

Compare expression of checked genes

Lus10016532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.