Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39700 456 / 7e-165 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G28950 437 / 3e-157 ATHEXPALPHA1.8, ATEXP6, ATEXPA6 ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1) AT2G37640 437 / 3e-157 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT3G55500 431 / 8e-155 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G02260 417 / 2e-149 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT5G56320 356 / 3e-125 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT1G69530 351 / 2e-123 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G03090 348 / 4e-122 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G05290 339 / 1e-118 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G40610 339 / 1e-118 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040801 [exp] 526 / 0 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10040286 [exp] 460 / 3e-166 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10023407 [exp] 456 / 2e-164 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10024388 [exp] 434 / 6e-156 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10010841 [exp] 379 / 1e-129 AT2G37640 373 / 6e-127 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10034227 [exp] 353 / 3e-124 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10042214 [exp] 352 / 9e-124 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10036763 [exp] 351 / 3e-123 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10008603 [exp] 349 / 2e-122 AT2G40610 397 / 2e-141 expansin A8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240900 [exp] 471 / 1e-170 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.009G031800 [exp] 469 / 1e-169 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.010G202500 [exp] 458 / 2e-165 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.008G057100 [exp] 453 / 1e-163 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.006G086100 [exp] 444 / 6e-160 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.016G135200 [exp] 364 / 2e-128 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 363 / 6e-128 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.019G057500 [exp] 357 / 2e-125 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.008G088300 [exp] 354 / 2e-124 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G001100 [exp] 350 / 6e-123 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10016533 pacid=23144814 polypeptide=Lus10016533 locus=Lus10016533.g ID=Lus10016533.BGIv1.0 annot-version=v1.0 ATGGGCCGTCTGTTCTTCTGCATTGTGCTCTTATTGCCTTTAATGTGGATGGTGGCAGAGGCTAGAATCCCCGGAGTCTACTCCGGCGGCGGATGGCAGC AAGCTCACGCCACCTTCTACGGCGGTTCCGATGCTTCTGGAACCATGGGGGGAGCTTGTGGGTACGGAAATCTGTACAGCCAAGGATACGGAGTGAATAC GGCAGCGCTAAGCACTGCTCTGTTCAACAACGGGCTAAGCTGCGGATCCTGCTTCGAAATTAAGTGCGCCGACGACCCAAGATGGTGTCATTCCGGCAGC CCTTCTATTTTAATCACTGCAACCAACTTCTGCCCACCCAATTTCGCACAACCCAGCGACAATGGCGGCTGGTGTAATCCTCCTCGCCCACATTTCGACC TTGCCATGCCCATGTTCTTGAAGATTGCAGAGTACCGGGCCGGAATCGTCCCCGTCACCTACCGCCGGGTGCCGTGCAGGAAGAGGGGAGGGATTAGGTT CACAATCAATGGTTTCCGTTACTTCAACCTTGTTCTGGTGAGCAACGTCGCCGGCGCTGGCGACATTGTGAAGGTGAGCGTGAAAGGAGCGAAGACAGGA TGGATGAGCATGAGCCGGAACTGGGGTCAAAACTGGCAGTCAAACGCTGTCCTCGTCGGTCAACCTCTTTCGTTCAGGGTCACAGGAAGCGACCGGCGGA CTTCCACTTCCTGGAACATTGCTCCGGCGGGATGGCAGTTCGGCCAGACATTCACCGGGAAGAATTTCAGGGTCTGA
AA sequence Show only first row Show all	>Lus10016533 pacid=23144814 polypeptide=Lus10016533 locus=Lus10016533.g ID=Lus10016533.BGIv1.0 annot-version=v1.0 MGRLFFCIVLLLPLMWMVAEARIPGVYSGGGWQQAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFEIKCADDPRWCHSGS PSILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVTYRRVPCRKRGGIRFTINGFRYFNLVLVSNVAGAGDIVKVSVKGAKTG WMSMSRNWGQNWQSNAVLVGQPLSFRVTGSDRRTSTSWNIAPAGWQFGQTFTGKNFRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10016533 [exp]	0	1
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040801 [exp]	1.0	0.9448
AT1G69160			unknown protein		Lus10019172 [exp]	2.0	0.8788
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Lus10041382 [exp]	3.5	0.8484
AT5G47740			Adenine nucleotide alpha hydro...		Lus10019487 [exp]	3.5	0.8232
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	5.7	0.8549
					Lus10010435 [exp]	8.4	0.8432
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10008190 [exp]	9.2	0.8163
AT5G58530			Glutaredoxin family protein (....		Lus10007517 [exp]	10.5	0.8020
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10018773 [exp]	15.5	0.8157
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10014172 [exp]	15.5	0.7848

Compare expression of checked genes

Lus10016533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.