Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18200 391 / 2e-136 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040803 [exp] 484 / 2e-174 AT5G18200 363 / 2e-126 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034400 [exp] 413 / 2e-145 AT5G18200 414 / 4e-145 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1) Potri.006G233200 [exp] 399 / 5e-140 AT5G18200 466 / 1e-165 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0265 [flax] [poplar] HIT PF01087 [flax] [poplar] GalP_UDP_transf Galactose-1-phosphate uridyl transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016535 pacid=23144829 polypeptide=Lus10016535 locus=Lus10016535.g ID=Lus10016535.BGIv1.0 annot-version=v1.0 ATGGCGGCACCTACAGGTCGGGTACCTGAACTGAGGCACGACCCGGTCTCCAACCGATGGGTCGTTTTCTCTCCGGCAAGGGCCAAGCGCCCTTCCGATT TCAAATCCAAGTCCCCGGAGAACCACCCTGATCCCAATTCCTCCGCTGCTAATTCATGCCCGTTCTGCATAGGCAACGAGAGCCATTGCGCCCCTGAGAT CTTCCGGTTCCCTCCCAATCAACCGAAATGGAAGATCAGGGTCATCGAGAATCTCTACCCCGCCCTCAGCCGAATTGCGGAGGACGATAAGCAGCAGCAG CTGCTGCAAGATCACGTCGCCGGTGGACGGAGCTTGAGCGGATTGGGGTTCCACGATGTGGTGATAGAGGCTCCAGTTCACACCGTGCAGTTGAGTGATT TGGCAGCTGGAGAGATCGGTGAGGTTTTGATTGCGTATAAGAAGAGGATTCTACAGATTGCAAGCTTTGATTCGATCAAATACGTCCTGATATTCAAGAA CCATGGTGCTTCAGCTGGTGCATCTTCGAGCCACTCGCACAATCAAATACTGGCTCTACCCGTCATCCCCACTGCTGTTTCCGCAAGACTTGATGGTACA AAGGAGTACTTCAACAAGACAGGGAAGTGCAGCCAGTGTGAAATCCAAAGCAAAGAGCTTTTGATCAACGAATCAACCCATTTCATATCAATCGCCCCCT TCGCCGCCACATTCGCTTTCGAGATATGGATCGTTCCGAGGGATCATTCGTCTCATTTTCACGAACTGGACTCTGACAAGGCAACCGATCTCAGGGAATT GCTAAAGCTCATGCTTAAAAAGATGTCAGCGCAGTTGAACAATCCACCGTTTAATTTCATGATCCAGATGTCTCCTCTCGCTGTTGAAGAATCGGAATTA GTGTACACTCACTGGTTTCTGCAGATCGTACCTCAACTAAGTGGAGTAGGGGGGGTTTGA
AA sequence Show only first row Show all	>Lus10016535 pacid=23144829 polypeptide=Lus10016535 locus=Lus10016535.g ID=Lus10016535.BGIv1.0 annot-version=v1.0 MAAPTGRVPELRHDPVSNRWVVFSPARAKRPSDFKSKSPENHPDPNSSAANSCPFCIGNESHCAPEIFRFPPNQPKWKIRVIENLYPALSRIAEDDKQQQ LLQDHVAGGRSLSGLGFHDVVIEAPVHTVQLSDLAAGEIGEVLIAYKKRILQIASFDSIKYVLIFKNHGASAGASSSHSHNQILALPVIPTAVSARLDGT KEYFNKTGKCSQCEIQSKELLINESTHFISIAPFAATFAFEIWIVPRDHSSHFHELDSDKATDLRELLKLMLKKMSAQLNNPPFNFMIQMSPLAVEESEL VYTHWFLQIVPQLSGVGGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18200			UTP:galactose-1-phosphate urid...		Lus10016535 [exp]	0	1
AT5G16380			Protein of unknown function, D...		Lus10020218 [exp]	3.5	0.6852
AT1G08800			Protein of unknown function, D...		Lus10024869 [exp]	12.6	0.6698
AT1G15780			unknown protein		Lus10025451 [exp]	15.9	0.5986
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034674 [exp]	18.0	0.6002
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10035329 [exp]	31.0	0.6565
AT1G57680			unknown protein		Lus10028891 [exp]	39.5	0.6252
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10036429 [exp]	51.5	0.6244
AT2G25920			unknown protein		Lus10002434 [exp]	55.3	0.6220
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10000230 [exp]	57.5	0.6133
AT5G09330	NAC	VNI1, ANAC082	VND-interacting 1, NAC domain ...		Lus10020896 [exp]	82.6	0.5960

Compare expression of checked genes

Lus10016535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.