Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28940 548 / 0 Protein kinase superfamily protein (.1.2) AT3G09830 430 / 1e-148 Protein kinase superfamily protein (.1.2) AT5G03320 423 / 1e-145 Protein kinase superfamily protein (.1) AT2G39110 400 / 8e-137 Protein kinase superfamily protein (.1) AT5G47070 343 / 8e-115 Protein kinase superfamily protein (.1) AT3G28690 342 / 1e-114 Protein kinase superfamily protein (.1.2.3) AT5G15080 344 / 9e-114 Protein kinase superfamily protein (.1) AT3G01300 340 / 2e-112 Protein kinase superfamily protein (.1) AT4G17660 334 / 1e-111 Protein kinase superfamily protein (.1) AT3G55450 317 / 8e-105 PBL1 PBS1-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040804 [exp] 763 / 0 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10038711 [exp] 450 / 1e-155 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 438 / 2e-150 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040135 [exp] 362 / 3e-122 AT5G47070 456 / 3e-160 Protein kinase superfamily protein (.1) Lus10001088 [exp] 360 / 2e-121 AT5G47070 455 / 4e-160 Protein kinase superfamily protein (.1) Lus10030668 [exp] 351 / 3e-116 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 350 / 4e-116 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10030796 [exp] 327 / 7e-107 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1) Lus10024391 [exp] 323 / 9e-107 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031500 [exp] 623 / 0 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G240500 [exp] 617 / 0 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G036800 [exp] 445 / 2e-154 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G225300 [exp] 441 / 9e-153 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.006G126000 [exp] 438 / 5e-151 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G052700 [exp] 387 / 2e-131 AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) Potri.001G149100 [exp] 372 / 3e-126 AT5G47070 496 / 7e-176 Protein kinase superfamily protein (.1) Potri.003G085300 [exp] 358 / 3e-120 AT5G47070 472 / 6e-166 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 352 / 5e-117 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 348 / 2e-115 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10016536 pacid=23144787 polypeptide=Lus10016536 locus=Lus10016536.g ID=Lus10016536.BGIv1.0 annot-version=v1.0 ATGAAGTGCTTCCATTTCTCCAACGGCGGCGGCGGAGCCGCATCAGCCGCCACCGACGACGACGGTGAAGGCAGCGGCAGCGGCAGCGGCGCCGCTTCTT CTAGAAACTCGCGGATGTCGTGGGCGAGGTCTTTGAGCGTCGCCTCTACTAACGTCGACACCAGGAGAGGCTCGTCGGACTTGTACTGCTACTCCTCCAG AGACTTGTCCGACTCTGTCGCCTTCTACGATTTCTTATCACATCGGAGAGCCAACGATTTGCACGTCTTCTCCTTCGCCGAGCTCAAAGCGGCGACCAAG GGGGTCAGCAGGTCGCTTTTGATCGGAGAGGGAGGATTCGGTTGCGTCTACCGCGGTGTCGTTAGGGTTCCTAATTGCGTTGACGACGACGGCGGTGATT CGGAGACGTTGGATGTTGCTATCAAACAATTGAATCGTCATGGTTTCCAGGCATGTTCCTTGTTACAGGGGCACAAGGAGTGGATCAACGAGGTGAATTT CTTGGGCGTGGTTAGCCATCCGAATTTAGTGAAGTTGGTTGGATATTGCGCTGAAGATGACGAAAGAGGGATGCAAAGGCTACTGGTTTATCAGCTGATG CGTAACAAGAGCTTGGAAGATCATCTCTTAACTCGAACTCCTTCGCCTCTTCCGTGGATCACAAGGTTGAAGATTGCTCAAGATGCTGCTCGTGGATTGG CTTACCTCCATGAAGAAATGGATTTTCAGTTAATATTTCGAGATTTCAAGGCTTCGAACATCCTGCTCGATGAAGATTTCAATGCCAAGCTATCAGATTT TGGTTTAGCTAGACAGGGTCCTCCTGAAGGGCTCAGCCATATCTCAACTTCAGTTGTGGGAACAGTTGGTTATGCAGCTCCAGAGTATGTACAGACCGGA AGGCTGACAGCGAAGAGCGATGTGTGGAGTTTTGGAGTGGTTATCTACGAGCTTATTACAGGTCGGCGGGTGATGGAGAGAAACCTACCGAGGGGAGAAC AGAAGCTCTTGGAATGGGTTCGGCCATACGTTTCCGATCCAAAGAAGTTTCATCTCATCGTAGATGCCCGACTGGAAGGAAAATACTGCCTTCGATCGGC GCAGAGAGCAGCAGGATTGGCAAACAAATGTCTCAGCAGACAGCCCAAGTCCAGGCCTAGAATGAGCGAAGTGGTCGAGTTGTTGGGGAACATCATCAGC GAGACATCAATCGAGGAAGAGGAAGTTGCTGAAATCGAAACTGAAAAGGTTAAAGACGAGAACCCAGTCGTGCCCGAGTGCACCGGCAAGAGCAGAAACA GTTACCTGAAGAAAGTTTTGGAGATGAGAGAGTTCAAGAGCTTTAGGTCGATTGGGAAGCAGCTAGATTGGAGAAATTGGACTCCTGGTCTCATAAGAAG TTCATGA
AA sequence Show only first row Show all	>Lus10016536 pacid=23144787 polypeptide=Lus10016536 locus=Lus10016536.g ID=Lus10016536.BGIv1.0 annot-version=v1.0 MKCFHFSNGGGGAASAATDDDGEGSGSGSGAASSRNSRMSWARSLSVASTNVDTRRGSSDLYCYSSRDLSDSVAFYDFLSHRRANDLHVFSFAELKAATK GVSRSLLIGEGGFGCVYRGVVRVPNCVDDDGGDSETLDVAIKQLNRHGFQACSLLQGHKEWINEVNFLGVVSHPNLVKLVGYCAEDDERGMQRLLVYQLM RNKSLEDHLLTRTPSPLPWITRLKIAQDAARGLAYLHEEMDFQLIFRDFKASNILLDEDFNAKLSDFGLARQGPPEGLSHISTSVVGTVGYAAPEYVQTG RLTAKSDVWSFGVVIYELITGRRVMERNLPRGEQKLLEWVRPYVSDPKKFHLIVDARLEGKYCLRSAQRAAGLANKCLSRQPKSRPRMSEVVELLGNIIS ETSIEEEEVAEIETEKVKDENPVVPECTGKSRNSYLKKVLEMREFKSFRSIGKQLDWRNWTPGLIRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28940			Protein kinase superfamily pro...		Lus10016536 [exp]	0	1
AT2G28940			Protein kinase superfamily pro...		Lus10040804 [exp]	1.0	0.8805
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	3.9	0.8242
AT3G62370			heme binding (.1)		Lus10023692 [exp]	4.4	0.7531
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10003312 [exp]	4.5	0.7987
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10013488 [exp]	6.9	0.8271
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10026559 [exp]	7.5	0.7601
AT3G05010			Protein of unknown function, t...		Lus10040523 [exp]	15.4	0.6941
AT3G15760			unknown protein		Lus10043269 [exp]	19.0	0.7675
AT4G31980			unknown protein		Lus10024948 [exp]	21.1	0.6706
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10011606 [exp]	23.0	0.8062

Compare expression of checked genes

Lus10016536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.