Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07570 537 / 0 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 535 / 0 APK1B protein kinase 1B (.1.2.3) AT5G02290 481 / 6e-170 NAK Protein kinase superfamily protein (.1.2) AT2G39660 448 / 9e-157 BIK1 botrytis-induced kinase1 (.1) AT2G02800 445 / 3e-155 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 422 / 2e-146 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT3G55450 418 / 3e-145 PBL1 PBS1-like 1 (.1.2) AT1G69790 402 / 1e-138 Protein kinase superfamily protein (.1) AT1G26970 402 / 2e-138 Protein kinase superfamily protein (.1) AT3G01300 402 / 2e-137 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040806 [exp] 758 / 0 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10004964 [exp] 558 / 0 AT2G28930 570 / 0.0 protein kinase 1B (.1.2.3) Lus10005462 [exp] 553 / 0 AT2G28930 569 / 0.0 protein kinase 1B (.1.2.3) Lus10002697 [exp] 517 / 0 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 512 / 0 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10023794 [exp] 507 / 1e-180 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 504 / 9e-179 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 503 / 3e-178 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012850 [exp] 433 / 2e-150 AT2G02800 614 / 0.0 protein kinase 2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240400 [exp] 578 / 0 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 558 / 0 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.016G094300 [exp] 517 / 0 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 516 / 0 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 505 / 5e-179 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G093700 [exp] 456 / 2e-159 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 453 / 1e-158 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.008G194700 [exp] 418 / 6e-144 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 417 / 2e-143 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 415 / 1e-142 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10016537 pacid=23144874 polypeptide=Lus10016537 locus=Lus10016537.g ID=Lus10016537.BGIv1.0 annot-version=v1.0 ATGGGGGCTTGCTTAAGTGCCCAGATTAAAGCCGAGAGCCCAATCAACACAGGGGCGAGTCCAAGGTACGTAAGTTGCGACGCCAATGGATCGGGCAAGG GGGCGAGTCCTCCGAACTACGTAAGCTGCGAAAGCAACAATGGAAATCTATCAGTGCCTCAAACTCCAAGGAGTGAGGGTGAGATACTGCAGTCACCTAA TTTGAAGAGCTTCAGTTTTGCTGATCTTAAGCAAGCTACTAGGAACTTTCGACCGGATAGTGTGGTAGGGGAAGGCGGGTTTGGTTCGGTTTTCAAAGGA TGGATCGACGAGAATACGTTCACTGCGACCAAACCTGGAACCGGATTGGTCATAGCTGTCAAAAGGCTGAACAAGGAGAGCTACCAAGGTCACAAGGAGT GGCTGACTGAAGTCAACTATTTAGGACAGTTCTGCCATCCTCATTTGGTCAAGCTCATTGGCTATTGCTTGGAAGACGAGCATCGCCTTCTCGTTTACGA GTTCATGCCTCGCGGAAGCTTAGAGAATCATCTCTTCAGAAGAGGCTCATATTTCCAGCCTCTTTCATGGAACCTAAGGTTGAAGGTTGCTCATGGTGCT GCAGAGGGGCTTGCTTTCCTTCACAGCTCCCAAGCGAAGGTCATTTATCGCGATTTTAAGACTTCTAACATCCTGCTCGATACAAAGTATGATGCTAAAC TCTCCGATTTTGGATTAGCCAAGGATGGTCCGACGGGAGACAAGAGTCATGTGTCCACAAGGATTATGGGAACATATGGTTATGCTGCTCCGGAGTACCT TGCCACAGGACATTTGACACCAAGGAGCGATGTGTTCAGCTTCGGAGTGGTGTTGCTAGAGATGCTATCAGGGAGGAGAGCGATCGACAAGAACCGGCCA TCAGGGGAGCACAACCTTGTGGAATGGGCTAAGCCGTACATCGGGAGCAAGCGCAAGGTGTTCAAGATACTGGACAACAGGCTGGAAGGGCAGTACACGA TGGAAGTAGCGTTCAAGGCGGCTTCACTTGCGTTGAGGTGCATTTCGATAGAGGCCAAGCTACGTCCAAATATGGAAGAGGTGGTGAGGACCTTGGAGGA CATCATCGAGTCGAACGAGATCAGCAATAGCGAGAGTGATCAGGCGAATAGTGCACCAACAAAGTGGCGGAGAAGAAGCGCAGATGATGCTAGCCGGAGG AGAAGGATCAGTGGTGCGTATAGCCGCCCCACTGCTTCTCCTCAACATGCTTGA
AA sequence Show only first row Show all	>Lus10016537 pacid=23144874 polypeptide=Lus10016537 locus=Lus10016537.g ID=Lus10016537.BGIv1.0 annot-version=v1.0 MGACLSAQIKAESPINTGASPRYVSCDANGSGKGASPPNYVSCESNNGNLSVPQTPRSEGEILQSPNLKSFSFADLKQATRNFRPDSVVGEGGFGSVFKG WIDENTFTATKPGTGLVIAVKRLNKESYQGHKEWLTEVNYLGQFCHPHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWNLRLKVAHGA AEGLAFLHSSQAKVIYRDFKTSNILLDTKYDAKLSDFGLAKDGPTGDKSHVSTRIMGTYGYAAPEYLATGHLTPRSDVFSFGVVLLEMLSGRRAIDKNRP SGEHNLVEWAKPYIGSKRKVFKILDNRLEGQYTMEVAFKAASLALRCISIEAKLRPNMEEVVRTLEDIIESNEISNSESDQANSAPTKWRRRSADDASRR RRISGAYSRPTASPQHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	0	1
AT1G13520			Protein of unknown function (D...		Lus10035080 [exp]	2.4	0.9615
AT3G21530			DNAse I-like superfamily prote...		Lus10034003 [exp]	3.7	0.9487
AT1G51340			MATE efflux family protein (.1...		Lus10042365 [exp]	3.9	0.9474
AT5G59790			Domain of unknown function (DU...		Lus10003286 [exp]	4.2	0.9455
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10035260 [exp]	4.6	0.9580
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	4.9	0.9532
AT4G23895			Pleckstrin homology (PH) domai...		Lus10032387 [exp]	5.6	0.9375
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	5.7	0.9585
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	6.5	0.9538
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	6.9	0.9570

Compare expression of checked genes

Lus10016537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.