Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55440 412 / 2e-147 CYTOTPI, ATCTIMC, TPI CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) AT2G21170 295 / 3e-100 PDTPI, TIM PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040807 [exp] 470 / 2e-170 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10005461 [exp] 455 / 2e-164 AT3G55440 454 / 4e-164 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10004963 [exp] 422 / 6e-148 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10012171 [exp] 299 / 5e-102 AT2G21170 481 / 5e-173 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Lus10007575 [exp] 275 / 7e-93 AT2G21170 466 / 2e-167 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031200 [exp] 412 / 1e-147 AT3G55440 358 / 4e-126 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.001G240300 [exp] 399 / 2e-142 AT3G55440 377 / 1e-133 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.008G056300 [exp] 396 / 4e-141 AT3G55440 400 / 1e-142 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.010G203500 [exp] 395 / 1e-140 AT3G55440 419 / 5e-150 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.009G129500 [exp] 298 / 1e-101 AT2G21170 479 / 8e-172 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Potri.004G168000 [exp] 297 / 3e-101 AT2G21170 489 / 5e-176 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00121 [flax] [poplar] TIM Triosephosphate isomerase
Representative CDS sequence Show only first row Show all	>Lus10016538 pacid=23144792 polypeptide=Lus10016538 locus=Lus10016538.g ID=Lus10016538.BGIv1.0 annot-version=v1.0 ATGGCCAGGAAATTCTTCGTCGGCGGTAACTGGAAATGCAATGGCACAACTGAGGAAGTTAAGAAGATTGTCACCCTTCTGAATGAAGCTGAGGTTCCCT CCGAGGATGTTGTTGAAGTTGTTGTCAGCCCCCCATACGTATTCCTACCCGTGGTTAAAGGCTTGTTGAGGCCTGACTTCAAGGTTGCTGCCCAGAATTG CTGGGTTCGCAAGGGTGGTGCTTTCACTGGAGAGATTAGTGCTGAGATGCTTATCAATTTGGACATTCCATGGGTCGTTCTTGGTCACTCTGAGAGGCGA GCTCTCCTGAATGAGTCTGATGAGTTTGTTGGAGATAAAGTAGCATATGCACTTTCTCAAGGATTGAAAGTGATTGCTTGTATTGGTGAAACACTTGAGC AACGAGAGTCAGGATCAACACTTGCAGTTGTCTCTGCTCAAACCAAAGCAATTGCAGATAAGATTAAAAGTTGGGACAACGTCGTCCTGGCATATGAACC AGTTTGGGCCATCGGCACAGGGAAGGTTGCATCACCTGCTCAGGCTCAAGAAGTCCATGCTGCATTGAGGAAGTGGCTTACTGAGAACGTCAGTGCTGAA GTAGCTCAGTCGACCAGAATTATCTATGGCGGTTCTGTGAATGGGGGAAACTGCAAAGAGTTGGGAGGACAGGCAGACGTTGATGGTTTCTTGGTTGGTG GAGCTTCTTTGAAGCCGGAGTTCATCGACATCATCAAGGCTGCGACTGTCAAGAGTGCTTGA
AA sequence Show only first row Show all	>Lus10016538 pacid=23144792 polypeptide=Lus10016538 locus=Lus10016538.g ID=Lus10016538.BGIv1.0 annot-version=v1.0 MARKFFVGGNWKCNGTTEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPVVKGLLRPDFKVAAQNCWVRKGGAFTGEISAEMLINLDIPWVVLGHSERR ALLNESDEFVGDKVAYALSQGLKVIACIGETLEQRESGSTLAVVSAQTKAIADKIKSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAALRKWLTENVSAE VAQSTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAATVKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10016538 [exp]	0	1
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10040807 [exp]	1.0	0.9568
AT3G58730			vacuolar ATP synthase subunit ...		Lus10038979 [exp]	2.4	0.8900
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035866 [exp]	3.2	0.9226
AT5G18200			UTP:galactose-1-phosphate urid...		Lus10040803 [exp]	4.8	0.8624
AT1G70730		PGM2	phosphoglucomutase 2, Phosphog...		Lus10034595 [exp]	5.3	0.8937
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10023087 [exp]	5.9	0.8550
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10002217 [exp]	6.2	0.8666
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10020241 [exp]	7.1	0.8438
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10007370 [exp]	7.5	0.8806
AT1G80040			unknown protein		Lus10026000 [exp]	7.7	0.8791

Compare expression of checked genes

Lus10016538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.