Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G55430 444 / 5e-153 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 410 / 3e-139 O-Glycosyl hydrolases family 17 protein (.1) AT3G46570 394 / 7e-135 Glycosyl hydrolase superfamily protein (.1) AT2G39640 399 / 7e-134 glycosyl hydrolase family 17 protein (.1) AT4G34480 387 / 8e-130 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 345 / 5e-114 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 334 / 5e-110 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G42720 319 / 3e-104 Glycosyl hydrolase family 17 protein (.1) AT4G26830 315 / 2e-102 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040808 [exp] 1024 / 0 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 675 / 0 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 491 / 1e-171 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10005459 [exp] 470 / 5e-165 AT5G24318 341 / 3e-115 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10021088 [exp] 431 / 4e-149 AT5G24318 324 / 3e-108 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 423 / 7e-145 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 397 / 1e-134 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023576 [exp] 390 / 1e-131 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040461 [exp] 389 / 3e-131 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240000 [exp] 652 / 0 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G056000 [exp] 520 / 0 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G055900 [exp] 513 / 6e-180 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 481 / 2e-167 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.010G203800 [exp] 424 / 6e-145 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 419 / 6e-143 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 417 / 2e-142 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 401 / 5e-136 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.015G010100 [exp] 357 / 5e-120 AT5G24318 466 / 1e-163 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.014G158400 [exp] 343 / 3e-113 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10016539 pacid=23144879 polypeptide=Lus10016539 locus=Lus10016539.g ID=Lus10016539.BGIv1.0 annot-version=v1.0 ATGGCTCAAACTTCCCTCATCTTCCTCCTCCTAGCCTACATCTTCATTTCTCCATCCACCTCTTCATACTCTATCGGAGTAAACTACGGAACCTGGGGCG ACAACCTCCCACCGCCATCCCAAGTAGCTGAGTTCCTCAAAACCCACACCACCATCGACCGAATCAAAATGTTCGACGCCAACCCGGACATCATCCGGGC CTTCGCCGACACCGGGATCTCAGTCACGGTCACCGTCGCCAACGCCGACGTCCCTGCACTCTCCAAGCTCCCCGCCGCACAGGACTGGATCGCCGCCAAC ATCCTCCCCTTCCACCCGCAAACAACCATCCGCTACATCTTGGTGGGGAACGAGGTCCTCTACTGGAAGGACAGGAACGTAATTGCCTACACCCTCCCGG CGATGAAGACCGTGCACCACGCCTTGCAGCTCGCGAATCTCACGGATATTAAGGTCACAACTCCCCACGCGCTCTCGTTCCTCGCCGCATCGGAGCCTCC CAGCACTGGGGTGTTCAAGAAGTTCGACGGCGAGATCTTGGAGCCCATCCTTGACTTCCACCGCCGGACGAAGACTCCGTTTATGGTGAACCCGTACCCG TTCTTCGGGTACAGGGACGAGGTGAAGGATTACGCTGTTTTCCGGCCGAGTAAAGGGCTGTACGATAAGCATACGGGGATAAACTACACGAATATGTTTG ACGAGCAGATGGATGCGGTTTATTCCTCGATGAAGAAGCTTGGGAAAGGGTACGAGGAGGATGTGGAGATTGTGATTGGGGAGACGGGTTGGCCGTCGGC GGGTGACCCGAATCAGCCCGGTGTTAGCTTGGAGAATGCGCTGTCGTATAACGGGAACGTCGTGAAGCATGTGAACTCCGGGAAAGGGACGCCGTTGATG CCCAATCGGACTTTCGAAACTTATATGTTTGCTCTGTTTAACGAGAATCTCAAGGCTTCGATCTCGGAGAAGAATTACGGGCTGTTCAGGCCTGATTTTA CTGCCGTGTACGACGTCGGCCTTATGCGCAGCTCGCCGGCACAAGCTCCTCCGACGAGCAACGGAACTACTACTCCAGGGAAGGCACCGCCGTCCGACGG AACCAATCCAGCTCCGGCGGAGAAGCAATGGTGCGTGCCGACATCCGACGCTAGCGACGAGGCATTACAGAAGAATCTGGACTACGTATGCAGCTTGGGA GTGGATTGCCGGCCGATACAGGACGGCGGGCCTTGTTTCAGCCCAAATACAGTCCGGTCACACGCGTCGTACGCGATGAACGCCTACTATCAGACCTACG GCCACCACTATTTCAACTGTGATTTCGAGCGCACCGGAGTTGTAACCTCCACCGATCCAAGTTACGAGGCGTGCAGCTATCCGTTGACCGGATTGGAATT GTTGGAGGTGAAGAAGTCGGTGGTCAAGTCTATGTCGCCGAGATTGGTTGGGTTGGCGTTTACGGAGTTGCTTGCGGCGGCGGGTTTCGTGGTTTCTTTG TTGTTCCGTTTTGTCTGA
AA sequence Show only first row Show all	>Lus10016539 pacid=23144879 polypeptide=Lus10016539 locus=Lus10016539.g ID=Lus10016539.BGIv1.0 annot-version=v1.0 MAQTSLIFLLLAYIFISPSTSSYSIGVNYGTWGDNLPPPSQVAEFLKTHTTIDRIKMFDANPDIIRAFADTGISVTVTVANADVPALSKLPAAQDWIAAN ILPFHPQTTIRYILVGNEVLYWKDRNVIAYTLPAMKTVHHALQLANLTDIKVTTPHALSFLAASEPPSTGVFKKFDGEILEPILDFHRRTKTPFMVNPYP FFGYRDEVKDYAVFRPSKGLYDKHTGINYTNMFDEQMDAVYSSMKKLGKGYEEDVEIVIGETGWPSAGDPNQPGVSLENALSYNGNVVKHVNSGKGTPLM PNRTFETYMFALFNENLKASISEKNYGLFRPDFTAVYDVGLMRSSPAQAPPTSNGTTTPGKAPPSDGTNPAPAEKQWCVPTSDASDEALQKNLDYVCSLG VDCRPIQDGGPCFSPNTVRSHASYAMNAYYQTYGHHYFNCDFERTGVVTSTDPSYEACSYPLTGLELLEVKKSVVKSMSPRLVGLAFTELLAAAGFVVSL LFRFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016539 [exp]	0	1
AT3G21350		MED6	RNA polymerase transcriptional...		Lus10022814 [exp]	3.0	0.9307
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031277 [exp]	4.9	0.9214
AT3G21350		MED6	RNA polymerase transcriptional...		Lus10011881 [exp]	6.0	0.8827
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10041728 [exp]	8.4	0.9183
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10002542 [exp]	9.9	0.9075
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10037445 [exp]	11.1	0.9235
AT5G45590			Ribosomal protein L35 (.1)		Lus10012140 [exp]	16.1	0.9125
AT3G25150			Nuclear transport factor 2 (NT...		Lus10022765 [exp]	16.2	0.9125
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10000946 [exp]	17.1	0.9225
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10009670 [exp]	19.4	0.9037

Compare expression of checked genes

Lus10016539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.