Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62690 64 / 1e-12 ATL5 AtL5 (.1) AT5G57750 61 / 6e-12 RING/U-box superfamily protein (.1) AT2G47560 61 / 7e-12 RING/U-box superfamily protein (.1) AT1G23980 62 / 8e-12 RING/U-box superfamily protein (.1) AT5G43420 62 / 9e-12 RING/U-box superfamily protein (.1) AT4G10150 61 / 9e-12 RING/U-box superfamily protein (.1) AT3G48030 61 / 2e-11 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT4G10160 61 / 2e-11 RING/U-box superfamily protein (.1) AT1G04360 61 / 3e-11 RING/U-box superfamily protein (.1) AT5G40250 61 / 3e-11 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016542 [exp] 73 / 1e-15 AT5G57750 60 / 1e-10 RING/U-box superfamily protein (.1) Lus10029178 [exp] 62 / 2e-11 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10036378 [exp] 60 / 2e-11 AT3G61460 210 / 5e-70 brassinosteroid-responsive RING-H2 (.1) Lus10028773 [exp] 59 / 4e-11 AT3G61460 169 / 4e-54 brassinosteroid-responsive RING-H2 (.1) Lus10030972 [exp] 60 / 6e-11 AT4G17920 191 / 6e-59 RING/U-box superfamily protein (.1) Lus10022223 [exp] 59 / 6e-11 AT1G23980 81 / 2e-17 RING/U-box superfamily protein (.1) Lus10008797 [exp] 59 / 7e-11 AT5G40250 77 / 2e-16 RING/U-box superfamily protein (.1) Lus10035368 [exp] 59 / 8e-11 AT4G17920 194 / 2e-60 RING/U-box superfamily protein (.1) Lus10015502 [exp] 59 / 9e-11 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G140900 [exp] 65 / 6e-13 AT4G17920 183 / 3e-56 RING/U-box superfamily protein (.1) Potri.002G039700 [exp] 65 / 9e-13 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 63 / 3e-12 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.008G025300 [exp] 61 / 7e-12 AT4G40070 86 / 7e-20 RING/U-box superfamily protein (.1) Potri.009G110000 [exp] 62 / 9e-12 AT3G18930 227 / 5e-70 RING/U-box superfamily protein (.1.2) Potri.010G235200 [exp] 61 / 1e-11 AT1G20823 80 / 3e-18 RING/U-box superfamily protein (.1) Potri.008G019000 [exp] 60 / 1e-11 AT5G06490 131 / 8e-39 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 61 / 2e-11 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.010G206200 [exp] 59 / 3e-11 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.018G046900 [exp] 59 / 4e-11 AT5G20885 136 / 4e-41 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10016541 pacid=23144831 polypeptide=Lus10016541 locus=Lus10016541.g ID=Lus10016541.BGIv1.0 annot-version=v1.0 ATGTACGCGTTGATTGTGGTTGATCTGATAGTTGGATTAATCATGTTACTGATAGTTATGTTTGAAGTATGCTTCGGCCATAGAGGCCGGCAGTCGACGG GAACAGTACCGGCGCCGGCGGCAGGGATTACTAATATTAATTCTCCGCCGCCTGAAGTTGTTACAGGAGAAGTGGTGAAGTACCAAAACTGGGTATCAGA AGAAGAAGTAGTAGACGAAGAGAAAGGCGGCGGCGGCGGCGGCGGCGGAGGCAGGCGAGAAGAGACAAAAGAGTGTTCGATTTGCTTGGAGGAGTTCAAG GGTGAGGACGAGTGCAGGGTTCTTACGGTGTGCGGTCATGTCTATCATAAAGAGTGCATTGACCTTTGGTTGACTGATGATAATCACTGCCCTCTTTGTC GCGGCTCTGTTCGACGGGGCGGCACGCGTTTTGCGTGGGGCCGCCGTTTAGACGGCGTCGACGGAAACCACCACATTGATCGGATTTAG
AA sequence Show only first row Show all	>Lus10016541 pacid=23144831 polypeptide=Lus10016541 locus=Lus10016541.g ID=Lus10016541.BGIv1.0 annot-version=v1.0 MYALIVVDLIVGLIMLLIVMFEVCFGHRGRQSTGTVPAPAAGITNINSPPPEVVTGEVVKYQNWVSEEEVVDEEKGGGGGGGGGRREETKECSICLEEFK GEDECRVLTVCGHVYHKECIDLWLTDDNHCPLCRGSVRRGGTRFAWGRRLDGVDGNHHIDRI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57750			RING/U-box superfamily protein...		Lus10016541 [exp]	0	1
					Lus10037862 [exp]	2.0	0.7466
					Lus10024992 [exp]	10.3	0.6535
AT1G09290			unknown protein		Lus10012754 [exp]	13.3	0.6340
AT3G52470			Late embryogenesis abundant (L...		Lus10000157 [exp]	18.2	0.6070
AT1G50560		CYP705A25	"cytochrome P450, family 705, ...		Lus10015706 [exp]	30.4	0.5772
AT4G05030			Copper transport protein famil...		Lus10039093 [exp]	39.7	0.5628
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036822 [exp]	40.5	0.5868
AT4G19130			Replication factor-A protein 1...		Lus10034056 [exp]	41.2	0.5511
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022426 [exp]	50.7	0.5562
					Lus10029048 [exp]	50.8	0.5334

Compare expression of checked genes

Lus10016541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.