Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57750 60 / 2e-10 RING/U-box superfamily protein (.1) AT5G41400 56 / 3e-09 RING/U-box superfamily protein (.1) AT3G61460 56 / 4e-09 BRH1 brassinosteroid-responsive RING-H2 (.1) AT1G63840 55 / 6e-09 RING/U-box superfamily protein (.1) AT1G53010 54 / 1e-08 RING/U-box superfamily protein (.1) AT2G35420 54 / 3e-08 RING/U-box superfamily protein (.1) AT3G60220 54 / 4e-08 ATL4 TOXICOS EN LEVADURA 4 (.1) AT4G00305 51 / 5e-08 RING/U-box superfamily protein (.1) AT4G17920 52 / 2e-07 RING/U-box superfamily protein (.1) AT5G46650 52 / 2e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016540 [exp] 84 / 2e-19 ND / Lus10016541 [exp] 77 / 5e-17 AT5G57750 68 / 2e-14 RING/U-box superfamily protein (.1) Lus10008797 [exp] 62 / 6e-11 AT5G40250 77 / 2e-16 RING/U-box superfamily protein (.1) Lus10036378 [exp] 60 / 2e-10 AT3G61460 210 / 5e-70 brassinosteroid-responsive RING-H2 (.1) Lus10022223 [exp] 57 / 2e-09 AT1G23980 81 / 2e-17 RING/U-box superfamily protein (.1) Lus10028773 [exp] 55 / 6e-09 AT3G61460 169 / 4e-54 brassinosteroid-responsive RING-H2 (.1) Lus10024657 [exp] 54 / 1e-08 AT3G61460 200 / 4e-66 brassinosteroid-responsive RING-H2 (.1) Lus10032290 [exp] 54 / 1e-08 AT3G61460 200 / 2e-66 brassinosteroid-responsive RING-H2 (.1) Lus10030972 [exp] 55 / 2e-08 AT4G17920 191 / 6e-59 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087700 [exp] 60 / 8e-11 AT3G61460 220 / 2e-74 brassinosteroid-responsive RING-H2 (.1) Potri.002G161900 [exp] 58 / 3e-10 AT3G61460 234 / 7e-80 brassinosteroid-responsive RING-H2 (.1) Potri.001G140900 [exp] 57 / 3e-09 AT4G17920 183 / 3e-56 RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 57 / 4e-09 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 53 / 8e-08 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 52 / 2e-07 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1) Potri.017G072300 [exp] 52 / 2e-07 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 51 / 2e-07 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.001G101000 [exp] 50 / 3e-07 AT3G61460 171 / 9e-55 brassinosteroid-responsive RING-H2 (.1) Potri.010G047100 [exp] 49 / 3e-07 AT1G67856 133 / 4e-41 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10016542 pacid=23144883 polypeptide=Lus10016542 locus=Lus10016542.g ID=Lus10016542.BGIv1.0 annot-version=v1.0 ATGATGGATATCCCTCATGGTCTAGATCTCCCGCTTATGATAGTTTTCGCTACCGTAGTTTTTCTATGCTTGGCAATATTCTGTGAAACAAAACGACCGG CGGCGGGAACCAACGGCGGTAACAGAATTCAGACTGTACAACCACTAACACGGCCGCCGAGAAGGACGGTTGCTGGGGAAGCTCCTCCATTCATTGAAAC TGTTATAGGGGAAGTCGTTAAGTTCAAAAACTGGGTAGTTGTAGATCGGAAAGAAGACGAAGGAGGAGAAGTAGACCTGGAGAATGGCGGCTGCGGCGAC GGCGGGAGGAGGCATGATGAGAAAGAGTGCTCGATTTGCTTGGAGGAGTTTAAGGTTCTCGCAGTATTCGTATTTCTAATTATTGGGTGCCTTGAATTCG GTTACCGTAAAAACAACGATGGTAACAGAATAAGACAACCGCCGACGAGTACCGTCGCTGGAGGAAGAGCTCCAGTGCCACCAACACCACAACAACAACA ACAGAGACCAGTCGTTGCGGTGGCGGTTATAGGGGAAGTCGTTAAGTTCAAAGACTGGGTAGTTGTAGATCGCAAAGAAGACGGCGAGGAAGTAGACCTG GAGCAAGGCAGCGGCGGCGGGAGGAGGCATGATGAGAAAGAGTGCTCGATTTGCTTGGAGGGATTTAAGGGTGAGGATGAGTGCAGGGTTCTTACGGTGT GCCAGCATATTTTTCACCGAGAGTGCATTGACCGATGGTTGACTGGTGATAAAACTACATCGATCGTATATGGACAGATGTTCAACGAGTTTGAGTTCAG CGCAGATACAACTAAATCTTTTCCGATCCATCATTCAAATGATACGGATCTTGAATTTTCATTGTACCCGTCAACGAGCCTTTTTATCGGACAAATTCAG CTTATGACGAGTGGGGTTTGA
AA sequence Show only first row Show all	>Lus10016542 pacid=23144883 polypeptide=Lus10016542 locus=Lus10016542.g ID=Lus10016542.BGIv1.0 annot-version=v1.0 MMDIPHGLDLPLMIVFATVVFLCLAIFCETKRPAAGTNGGNRIQTVQPLTRPPRRTVAGEAPPFIETVIGEVVKFKNWVVVDRKEDEGGEVDLENGGCGD GGRRHDEKECSICLEEFKVLAVFVFLIIGCLEFGYRKNNDGNRIRQPPTSTVAGGRAPVPPTPQQQQQRPVVAVAVIGEVVKFKDWVVVDRKEDGEEVDL EQGSGGGRRHDEKECSICLEGFKGEDECRVLTVCQHIFHRECIDRWLTGDKTTSIVYGQMFNEFEFSADTTKSFPIHHSNDTDLEFSLYPSTSLFIGQIQ LMTSGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57750			RING/U-box superfamily protein...		Lus10016542 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013923 [exp]	5.7	0.8498
AT3G02210		COBL1	COBRA-like protein 1 precursor...		Lus10033047 [exp]	6.6	0.8138
AT5G17850			Sodium/calcium exchanger famil...		Lus10034284 [exp]	10.1	0.8107
AT5G39020			Malectin/receptor-like protein...		Lus10008333 [exp]	12.2	0.8062
AT5G56990			unknown protein		Lus10029528 [exp]	15.3	0.8017
					Lus10003825 [exp]	16.8	0.8017
					Lus10038051 [exp]	18.1	0.8017
AT5G01660			unknown protein		Lus10040599 [exp]	19.4	0.8017
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	20.6	0.8017
					Lus10029261 [exp]	21.7	0.8017

Compare expression of checked genes

Lus10016542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.