Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28910 188 / 2e-57 CXIP4 CAX interacting protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040809 [exp] 249 / 3e-81 AT2G28910 210 / 7e-66 CAX interacting protein 4 (.1) Lus10004961 [exp] 183 / 2e-55 AT2G28910 182 / 3e-55 CAX interacting protein 4 (.1) Lus10005458 [exp] 181 / 1e-54 AT2G28910 184 / 9e-56 CAX interacting protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148000 [exp] 204 / 1e-63 AT2G28910 199 / 2e-61 CAX interacting protein 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016543 pacid=23144827 polypeptide=Lus10016543 locus=Lus10016543.g ID=Lus10016543.BGIv1.0 annot-version=v1.0 ATGCCGGCCACAGCTGGAAGGGTTCGCATGCCCGCAAACAACAGGGTGCACAGTAGTGCTGCCCTTCAGACTCACGGTATATGGCAAAGTGCCATTGGTT ATGACCCTTATGCCCCCAACAAGGACGACGCAAAAGCTTCAGCACAGCCAAAGGCATCGGCTGCCGAACCCGACAGCGAGAATGCATACACTAGTTTCAA GGATCTCATGGCACTTGCACGTATCACCGGCTCTAATGCCGATGAGGTCCGCGGTGCTTGCAAGAGATGTGGACGAGTCGGACACCTTACTTACCAATGT CGGAACTTCCTCAGCTCAAAGGAGAAAGACCCTGCAGCGATTCATGCTGCAGCTTTGTCAGGATTGAACAAAATAAAGGGGAATGCCAGAGACGACAGTG ATGACGAGAGTGAAGAAGATGAGGAGAGCGAGACTTCTGATTCCGAAGTTGATCCCGAGATGGAGAGGATCATAGCTGAAAGATATGGGAAGAAGAATAG TGGGAAGTCGAAGTCGAAATCTTCGAAGAAGAAGAAGAAGAAAGAGGATTCGGATGAAGAGAGCGAGGATTCTGATATGGAGAAGAGGAGGAAGAGAGGA AGATCGAAGAAAAGGAGGAGCAGGAAGAGTGGAAGTAGCGACTCGGAGGAAGAAAGGAGGAGACGCAGAAGGGAGAAGAGAAGAAAGAGAGACGATTCTT CTTCTGACGAAGAGGAAGAAGAGCGGCGTCACCGCAAGAGGAAAGAGAGGAGAAGGAGACGTAGGAGTCGTCATTCTGATGATTCTGATACTGATTCGTC CGAGGACTCTCGTAAGCAGAGACGGAAGAGCAGGAAGGCTACATCGAGTTCGAGTGACTCGGAAGATGACTCAAGTCGTGGAAGGAGTTCAAAGAGGTCT GAGAAGAAGAGCAGGAGGCGACGGAATGATAGAGAATAA
AA sequence Show only first row Show all	>Lus10016543 pacid=23144827 polypeptide=Lus10016543 locus=Lus10016543.g ID=Lus10016543.BGIv1.0 annot-version=v1.0 MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDAKASAQPKASAAEPDSENAYTSFKDLMALARITGSNADEVRGACKRCGRVGHLTYQC RNFLSSKEKDPAAIHAAALSGLNKIKGNARDDSDDESEEDEESETSDSEVDPEMERIIAERYGKKNSGKSKSKSSKKKKKKEDSDEESEDSDMEKRRKRG RSKKRRSRKSGSSDSEEERRRRRREKRRKRDDSSSDEEEEERRHRKRKERRRRRRSRHSDDSDTDSSEDSRKQRRKSRKATSSSSDSEDDSSRGRSSKRS EKKSRRRRNDRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10016543 [exp]	0	1
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10031877 [exp]	5.7	0.8567
					Lus10035559 [exp]	7.7	0.7671
AT5G35320			unknown protein		Lus10020176 [exp]	9.2	0.8369
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10029455 [exp]	13.5	0.8386
AT2G39170			unknown protein		Lus10018298 [exp]	14.0	0.6997
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10035781 [exp]	14.6	0.8310
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	16.2	0.8272
AT4G02450			HSP20-like chaperones superfam...		Lus10000340 [exp]	17.9	0.8282
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10020815 [exp]	18.5	0.8262
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Lus10031394 [exp]	21.0	0.7807

Compare expression of checked genes

Lus10016543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.