Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35010 107 / 1e-29 ATO1 thioredoxin O1 (.1.2) AT1G31020 96 / 4e-25 ATO2 thioredoxin O2 (.1) AT3G17880 48 / 1e-06 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT1G45145 42 / 2e-05 LIV1, ATTRX5, ATH5 LOCUS OF INSENSITIVITY TO VICTORIN 1, thioredoxin H-type 5 (.1) AT3G51030 42 / 2e-05 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT5G42980 40 / 0.0001 ATTRXH3, ATTRX3, ATH3 THIOREDOXIN H3, thioredoxin H-type 3, thioredoxin 3 (.1) AT5G04260 39 / 0.0007 WCRKC2 WCRKC thioredoxin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031334 [exp] 53 / 2e-08 AT3G17880 456 / 3e-160 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Lus10024293 [exp] 49 / 9e-08 AT3G51030 162 / 4e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10000802 [exp] 48 / 2e-07 AT3G51030 165 / 5e-54 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10028349 [exp] 46 / 1e-06 AT3G51030 179 / 1e-59 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10041799 [exp] 46 / 1e-06 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10014186 [exp] 45 / 3e-06 AT3G08710 192 / 3e-64 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Lus10042784 [exp] 45 / 4e-06 AT3G15360 165 / 4e-52 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10029752 [exp] 45 / 4e-06 AT3G15360 165 / 3e-52 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10022727 [exp] 45 / 6e-06 AT3G08710 189 / 6e-63 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G159000 [exp] 116 / 7e-33 AT2G35010 162 / 7e-51 thioredoxin O1 (.1.2) Potri.012G045000 [exp] 57 / 5e-10 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.015G036000 [exp] 53 / 2e-08 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.002G030000 [exp] 45 / 3e-06 AT3G51030 160 / 3e-52 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.005G232700 [exp] 45 / 3e-06 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.005G186800 [exp] 44 / 9e-06 AT4G03520 152 / 3e-47 Thioredoxin superfamily protein (.1.2) Potri.002G073000 [exp] 43 / 3e-05 AT4G03520 152 / 6e-47 Thioredoxin superfamily protein (.1.2) Potri.005G058400 [exp] 42 / 6e-05 AT4G03520 157 / 6e-49 Thioredoxin superfamily protein (.1.2) Potri.011G111500 [exp] 42 / 0.0001 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.006G110100 [exp] 40 / 0.0002 AT3G08710 178 / 1e-58 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10016544 pacid=23144799 polypeptide=Lus10016544 locus=Lus10016544.g ID=Lus10016544.BGIv1.0 annot-version=v1.0 ATGCAAGGGAAACCACCAACGGAGAGGATGAACTGGAACTCAGTGATCGGACCGATTCTTCGCCGCGGGGCAGCCAACTTTTTTGTCCGTTCCTCGCCGT CGATTCTCGGTGAATCCACAACTCCGCTCGCCAACCTAATCTCTTCACCTAGTTTCCGGAGGTTTTGCGGGAATCCCTCTTTCGCCGCAGCAGCAAGCAC GAACGCAGCTGCTTTCCATGCCTCAACTCCCATGCAATTCAATCGGAGCTTCAGCTCCTCACCAGGTTCAACCAACGTTGTGTCTATCAAGACTGAAGAG GAGTACAATAGCTCTATGAAGAACGTCCATGGTAAGTTCATATCTCCAGTCATCACACAGCTAAGCGAGCAATATCCTCATGTACCAACGTACAAGATTG ACATCGATCAGGAGGGGCTGGATAATGTATTGAGCAGATTGTTTATCACCTCTGTGCCAACCCTCCATTTCTACCAAAACGGGAAGAAGGCAGCTGAAGT TGTTGGGGCCGATGTTGCTCTCCTAAAGGAGACAATGGAAGAACTCTATGGGTAA
AA sequence Show only first row Show all	>Lus10016544 pacid=23144799 polypeptide=Lus10016544 locus=Lus10016544.g ID=Lus10016544.BGIv1.0 annot-version=v1.0 MQGKPPTERMNWNSVIGPILRRGAANFFVRSSPSILGESTTPLANLISSPSFRRFCGNPSFAAAASTNAAAFHASTPMQFNRSFSSSPGSTNVVSIKTEE EYNSSMKNVHGKFISPVITQLSEQYPHVPTYKIDIDQEGLDNVLSRLFITSVPTLHFYQNGKKAAEVVGADVALLKETMEELYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35010		ATO1	thioredoxin O1 (.1.2)		Lus10016544 [exp]	0	1
AT1G62850			Class I peptide chain release ...		Lus10024564 [exp]	21.0	0.7024
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10018853 [exp]	113.5	0.6979
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10003973 [exp]	120.9	0.6982
AT2G16940			Splicing factor, CC1-like (.1....		Lus10027830 [exp]	146.6	0.6751
AT3G20240			Mitochondrial substrate carrie...		Lus10034806 [exp]	149.7	0.6654
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10033865 [exp]	154.1	0.6802
AT2G47390			Prolyl oligopeptidase family p...		Lus10025027 [exp]	233.0	0.6506
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10003197 [exp]	253.7	0.6611

Compare expression of checked genes

Lus10016544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.