Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28900 156 / 1e-49 OEP16, ATOEP16-L, ATOEP16-1 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1) AT4G16160 62 / 2e-12 ATOEP16-2, ATOEP16-S Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040810 [exp] 244 / 2e-84 AT2G28900 181 / 9e-60 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1) Lus10016878 [exp] 56 / 5e-10 AT4G16160 209 / 1e-69 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G239900 [exp] 160 / 2e-51 AT2G28900 178 / 2e-58 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1) Potri.010G142300 [exp] 61 / 3e-12 AT4G16160 238 / 4e-81 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) Potri.008G107200 [exp] 57 / 1e-10 AT4G16160 214 / 9e-72 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10016545 pacid=23144897 polypeptide=Lus10016545 locus=Lus10016545.g ID=Lus10016545.BGIv1.0 annot-version=v1.0 ATGCCGAGCAGCAGCTTTACTGGGTCGCTAACTACTCCCACTATTGGTGTGGCAATCGACACCGGCAACCCCGTGCTCGACCTCACCGTCGATGGTTTCT TGAAGACTGCCGGCGTTGCGGCGGTAAGGGTTCTCGCAGATGATACATTCCACTCCATCAAAAGAGGGTCACTCTCAGGGAGTGATATTGAGAAATCGCT GAAAAAAATGTGCAAGGAAGGTGCTTACTGGGGGGCAGTCGGTGGAGTTTATGTGGGGCTGGAATATGGGATGCAGAGGATACGAGGAAGGAACGACTGG AAGAATGCAATGCTAGGAGGGTTGGCGACGGGGGCACTGATGTCGGCAGCGACGAGCAAGAGCACGGACAAGGTTATCAGTGATGCCATAACTGGAGGCG CCATTGCCACTGCTTGCAAGTTCCTCAACCATCTCGTCTGA
AA sequence Show only first row Show all	>Lus10016545 pacid=23144897 polypeptide=Lus10016545 locus=Lus10016545.g ID=Lus10016545.BGIv1.0 annot-version=v1.0 MPSSSFTGSLTTPTIGVAIDTGNPVLDLTVDGFLKTAGVAAVRVLADDTFHSIKRGSLSGSDIEKSLKKMCKEGAYWGAVGGVYVGLEYGMQRIRGRNDW KNAMLGGLATGALMSAATSKSTDKVISDAITGGAIATACKFLNHLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10016545 [exp]	0	1
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10040810 [exp]	1.0	0.8969
AT4G23900			Nucleoside diphosphate kinase ...		Lus10001824 [exp]	5.5	0.8164
					Lus10043166 [exp]	6.2	0.7967
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038305 [exp]	8.6	0.8539
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10000063 [exp]	20.2	0.8396
AT5G20500			Glutaredoxin family protein (....		Lus10021590 [exp]	21.5	0.7871
AT1G29270			unknown protein		Lus10007304 [exp]	26.9	0.7874
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10038638 [exp]	30.9	0.8303
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015111 [exp]	31.7	0.8394
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10038780 [exp]	36.8	0.7743

Compare expression of checked genes

Lus10016545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.