Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07615 456 / 5e-157 GTP-binding protein Obg/CgtA (.1) AT5G18570 138 / 1e-34 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G30580 60 / 2e-09 GTP binding (.1) AT1G56050 60 / 2e-09 GTP-binding protein-related (.1) AT4G39520 57 / 1e-08 GTP-binding protein-related (.1) AT1G17470 55 / 7e-08 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT1G72660 55 / 8e-08 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G80770 48 / 8e-06 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G57960 48 / 2e-05 GTP-binding protein, HflX (.1) AT1G10300 45 / 0.0001 Nucleolar GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040813 [exp] 486 / 4e-171 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1) Lus10034166 [exp] 141 / 7e-36 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 137 / 3e-34 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10024297 [exp] 132 / 2e-33 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10031209 [exp] 61 / 9e-10 AT1G56050 630 / 0.0 GTP-binding protein-related (.1) Lus10023261 [exp] 60 / 2e-09 AT1G30580 711 / 0.0 GTP binding (.1) Lus10038543 [exp] 60 / 2e-09 AT1G30580 713 / 0.0 GTP binding (.1) Lus10005800 [exp] 57 / 1e-08 AT4G39520 682 / 0.0 GTP-binding protein-related (.1) Lus10006801 [exp] 57 / 2e-08 AT4G39520 655 / 0.0 GTP-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G239600 [exp] 516 / 6e-180 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.010G022400 [exp] 144 / 9e-37 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.002G029600 [exp] 126 / 4e-31 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G465900 [exp] 63 / 2e-10 AT1G30580 681 / 0.0 GTP binding (.1) Potri.011G164000 [exp] 62 / 5e-10 AT1G30580 691 / 0.0 GTP binding (.1) Potri.001G457900 [exp] 59 / 3e-09 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.007G080900 [exp] 58 / 7e-09 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.001G170300 [exp] 55 / 7e-08 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G063500 [exp] 55 / 7e-08 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G134900 [exp] 50 / 3e-06 AT1G80770 576 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase CL0023 [flax] [poplar] PF01018 [flax] [poplar] GTP1_OBG GTP1/OBG
Representative CDS sequence Show only first row Show all	>Lus10016548 pacid=23144855 polypeptide=Lus10016548 locus=Lus10016548.g ID=Lus10016548.BGIv1.0 annot-version=v1.0 ATGAGGTTGTTGCCCTCTGTTAAATCCCTGTGCCAGTTAGATGCGCTGAGAAAACCCACCAAGGCTCCATGGATGTTCTCGTCAATGTTTTCCTACTCGG AAAGTCCCCAGAAGAAAACCAAGGCCGCACCTTTGCAGGAGACTAGAATGAGAGACAGAATGAACCTGCATGCTAAAGGTGGTGATGGCGGAGGCGGATG CACCAGTTTTCGAAAGAGCCGACTTGAACGTCGTGGAAGACCCGATGGTGGAAATGGAGGAAGAGGTGGTGATGTAATTTTGGAATGCTCCCCTTCAGTC TGGGACTTCAGTGGTCTCCAGCATCATGTCAATGCTGCTAAAGGACGGCATGGAGGTTCAAAAAACATGATTGGAACTCGAGGACACGATAAGATCGTTC GAGTACCTGTTGGCACTGTGATTCATCTATTAAAGGGTGAGCTTCCATCTTTAGTTCCGAGCTGCTCTACCAAAGCATTGGATCCATGGGAACTTCCCGG TACATTAGATACTGATCAGACAGATTCTCAGCAGACAGACAAAGCTGAAAAAGAAGAATCCCCAGCTCCTGATAGGTGTGGCGTTTCGTCATCTGAAGAA GCTGAATCAAATTCTGAAGAATCACCAGGAATAGATGTCACACAAACTAAGTCAGCAGCTGATGGTGAGGAAATACAGTACAACGTTGCGGAATTGACCA AACCGGGTCAGCGAGTCATTGTAGCTCAAGGAGGGGAAGGTGGTTCGGGTAACGTGTCTTCTTCATACACTCCAAACATTGCCAAGGCCGCTGCTGCTAA GTCAAATGCTACCGATCTTGATGATAATGATCATCCCTCAGTCAGAGCCGGTAAACCCGGTTCTGAAGCTCTTGTAATTTTAGAGCTCAAGAGTATTGCA GATGTCGGATTAGTTGGTATGCCAAATGCAGGTAAAAGCACACTTCTTGGAGGCTTATCGAGAGCCAAGCCAACAGTCGGTCACTACGCCTTCACAACCT TGAGACCGAACCTAGGCAAGGTAAAATTCGAAGACTTCTCAATCACGGTGGCTGATGTTCCGGGACTGATAAAGGGGGCCCACGTGAACCGCGGGCTAGG CCACGCTTTCCTGAGACACATCGAGAGGACGAAGGTGTTGGCTTATGTGGTGGATTTGGCTGATGCGTTAGATAATAGAAGGAAAGGGCTTCAGCCTTGG GAGCAGCTGAGGGACTTGGTGTTGGAGCTCGAGCACCATCAGGCAGGGTTATCTGATCGGCCTTCGATTGTGGTGGCGAATAAGATAGATGAAGATGGAG CTGGAGAAGTGTTCGAGGAGTTGAAGAGGAGAGTAAAGGGTGTGCCTATATATCCGGTTTGTGCTGTGCTGGAAGAAGGGTTGCCTGAGATGAGAGATGG ACTTAGAATGCTGGTGGATGATGGTGGCGAATCTGGGAGGCTCTGCTTGGATCATATTGATTGTTCTGATATTGTTAAGGAGCAAGAAACTGGAAATTTT AGTGAAAGTCACTTACTTTGA
AA sequence Show only first row Show all	>Lus10016548 pacid=23144855 polypeptide=Lus10016548 locus=Lus10016548.g ID=Lus10016548.BGIv1.0 annot-version=v1.0 MRLLPSVKSLCQLDALRKPTKAPWMFSSMFSYSESPQKKTKAAPLQETRMRDRMNLHAKGGDGGGGCTSFRKSRLERRGRPDGGNGGRGGDVILECSPSV WDFSGLQHHVNAAKGRHGGSKNMIGTRGHDKIVRVPVGTVIHLLKGELPSLVPSCSTKALDPWELPGTLDTDQTDSQQTDKAEKEESPAPDRCGVSSSEE AESNSEESPGIDVTQTKSAADGEEIQYNVAELTKPGQRVIVAQGGEGGSGNVSSSYTPNIAKAAAAKSNATDLDDNDHPSVRAGKPGSEALVILELKSIA DVGLVGMPNAGKSTLLGGLSRAKPTVGHYAFTTLRPNLGKVKFEDFSITVADVPGLIKGAHVNRGLGHAFLRHIERTKVLAYVVDLADALDNRRKGLQPW EQLRDLVLELEHHQAGLSDRPSIVVANKIDEDGAGEVFEELKRRVKGVPIYPVCAVLEEGLPEMRDGLRMLVDDGGESGRLCLDHIDCSDIVKEQETGNF SESHLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10016548 [exp]	0	1
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Lus10001388 [exp]	4.9	0.7928
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	5.0	0.8196
AT1G80880			Tetratricopeptide repeat (TPR)...		Lus10041669 [exp]	5.3	0.7891
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10026937 [exp]	9.2	0.7744
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10036988 [exp]	10.4	0.7835
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10005561 [exp]	17.3	0.7517
AT4G19191			Tetratricopeptide repeat (TPR)...		Lus10031028 [exp]	17.4	0.7583
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	21.4	0.7548
AT2G20060			Ribosomal protein L4/L1 family...		Lus10005427 [exp]	21.5	0.7562
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	22.0	0.7999

Compare expression of checked genes

Lus10016548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.