Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71270 1192 / 0 ATVPS52, TTD8, POK T-DNA TRANSMISSION DEFECT 8, POKY POLLEN TUBE, ARABIDOPSIS THALIANA VPS52 HOMOLOG, Vps52 / Sac2 family (.1) AT1G71300 1111 / 0 Vps52 / Sac2 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040815 [exp] 1372 / 0 AT1G71270 1206 / 0.0 T-DNA TRANSMISSION DEFECT 8, POKY POLLEN TUBE, ARABIDOPSIS THALIANA VPS52 HOMOLOG, Vps52 / Sac2 family (.1) Lus10008551 [exp] 82 / 5e-18 AT5G58100 154 / 8e-44 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G027100 [exp] 1204 / 0 AT1G71270 1189 / 0.0 T-DNA TRANSMISSION DEFECT 8, POKY POLLEN TUBE, ARABIDOPSIS THALIANA VPS52 HOMOLOG, Vps52 / Sac2 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF04129 [flax] [poplar] Vps52 Vps52 / Sac2 family
Representative CDS sequence Show only first row Show all	>Lus10016549 pacid=23144820 polypeptide=Lus10016549 locus=Lus10016549.g ID=Lus10016549.BGIv1.0 annot-version=v1.0 ATGGCGGACCTCGAAAGACAAAATCTCGCCTGGTTCCAGGCCCCAGTCAAGCTTTACTGTCACCTGAGCTTTTCCGTAATTATACTTCTTCTTCTTCTTC TTCTCCATTGCCTGTTTGATCCTCGGTTCAACTGTGATTCCACCTGTTCCTTTGGTTGTTCAGCTGGATCCTCACCAGTTCCGTGCTTTAGAGCTTTGGT CTCGCTTCAAATGAAGGAAATTTCCGTCACAAAAACCCAGACCTCTGGGGATGGAACTGACAGTGCGAGAAGCGTGTTTGATTTGGGTGCGTTCGTCGGG GATTTGACGTCTCTGGATGATGATGCCAGCAGTGATGAAATATCACTTGAAGGTCTGGAACAGGAGCTGGAAGAGTGCAAAGGGGATGATGTGGTTGAAA ACATATTGTCCAAAGGTACAAAGCTAAGGGAGTACACGAAGGGTGTAGAGAACAACTTGCGGCAGGTTGAACTTGATTCCATCCAGGACTATATAAAAGA AAGTGACAATTTGGTATCTCTCCATGATCAAATTCGTGACTGCGATAGCATTCTGTCTCAGATGGAGACTCTTCTCAGTGGATTCCAAACTGAGATTGGC TCTATTAGTTCGGACATTAAGATTCTCCAGGAGAAATCTATGGATATGGGTCTGCGGCTGAAAAACCGGAAGGTTGCTGAATCAAAACTTGCAAGGTTCG TTGAAGACATTATAATTCCACCCAGAATGGTCGATGTGATTGTTGATGGAGAGGTTAATGATGAGTATCTGAGAACTCTAGAGATTCTTAGTAAAAAGCT GAAGTACGTTGAGGATGATCAATTAATTAAAAGTTCAAAAGCTCTCATGGATGTACAGCCTGAGCTTGATAAGCTTAGGCAGAAAGCAGTATCGAAAGTG TTTGATTTCATTGTTCAGAAGCTTCAAGCTCTGAGAAAACCTAAAACAAATATCCAGATCCTTCAACAAAGTGTTCTTTTAAAGTACAAGTATGTCATTT TCTTTTTAAAAGAACATGGAAGAGAGATATACACCGAAGTCCGCATTGCATATATTGACACAATGAATAAGGTTCTGAGTGCTCATTTCAGAGCATACAT TCAAGCATTGGAGAAATTGCAATTAGATATTGCGACTTCCAGTGATTTGATTGGTGTGGAGACCAGAAGCATGGGTTTATTTTCAATGACTAGGGAGCCA TTGAAGAATCGATCAGCTGTTTATGCTTTAGGAGACAGGATTAAAATCTTAAAGGAAATTGAACAACCAGCATTGATTCCTCATATAGCTGAAGCCAGCT CACAGAAACATCCATATGAGGTCCTCTTTAGGAGCTTACACAAGCTTCTAATGGATACAGCCACATCGGAGTATCTATTCTGTGATAATTTCTTTGGGGA GCAGTCCATGTTTAATGAAATACTTTCAGGTCCACTTGCTGTGATTGATGAACACTTCAATTCAATACTACCAAACAGCTACGATGCAATCGGCCTAATG CTAATGATTCGCATCATACACCAACACCAGCTAATTATGTCTCGGCGACGAATCCCATGTTTAGACTCATATCTAGACAAGGTCAATATTGCATTGTGGC CCCGTTTCAAGCTTGTGTTTGACTTGCACCTTAGTAGCATGAGGAACGCTAATATCAATACACTGTGGGAAGATGATGTCCATCCTCATTATGTCATGAG ACGTTATGCAGAATTTACAGCTTCTCTAATTCATCTCAATGTTGAATATGGAGATGGGCAACTTGAATTGAATATGGAAAGGCTCAGAATGGCTGTCGAT GACTTGATTATCAAGCTTGCTAGCAAATTCCCTAAACCAAAACAACAGATTGTTTTCCTCATAAACAACTATGACATGACAATTGCAGTAGTGAAGGAAG CAGGTCCTGAAGGTGGGAAAATTCAAATGCACTTTGAAGAACTGTTGAAGAGCAACACGACAATGTTCGTGGAAGAGCTCCTTTTGGAGCATTTCGGGGA TCTAATCAAGTTCGTCAAGACTCGAGCTTCGGAGGACCCAAATTCCAACCCAGAGAAGCCCATAAGTATTGCAGAAGTCGAACCACTTGTGAAAGACTTT GCAAGCCGATGGAAAGCAGCGATAGAGCTGATGCACAAAGATGTCATCACCTCATTCAGCAACTTCTTGTGTGGTATGGAGATCTTGAGGGCTGCACTAA CCCAGCTCCTCCTTTACTACACGAGGTTATCGGACTGCATAAAGAGAATACCCGGTGGCCCTGCCCTCAACAAAGATCTCATCTCCATATCCTCGATCAT GTACGAGATCAGGAAATACTCTAGAACTTTCTAG
AA sequence Show only first row Show all	>Lus10016549 pacid=23144820 polypeptide=Lus10016549 locus=Lus10016549.g ID=Lus10016549.BGIv1.0 annot-version=v1.0 MADLERQNLAWFQAPVKLYCHLSFSVIILLLLLLLHCLFDPRFNCDSTCSFGCSAGSSPVPCFRALVSLQMKEISVTKTQTSGDGTDSARSVFDLGAFVG DLTSLDDDASSDEISLEGLEQELEECKGDDVVENILSKGTKLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDSILSQMETLLSGFQTEIG SISSDIKILQEKSMDMGLRLKNRKVAESKLARFVEDIIIPPRMVDVIVDGEVNDEYLRTLEILSKKLKYVEDDQLIKSSKALMDVQPELDKLRQKAVSKV FDFIVQKLQALRKPKTNIQILQQSVLLKYKYVIFFLKEHGREIYTEVRIAYIDTMNKVLSAHFRAYIQALEKLQLDIATSSDLIGVETRSMGLFSMTREP LKNRSAVYALGDRIKILKEIEQPALIPHIAEASSQKHPYEVLFRSLHKLLMDTATSEYLFCDNFFGEQSMFNEILSGPLAVIDEHFNSILPNSYDAIGLM LMIRIIHQHQLIMSRRRIPCLDSYLDKVNIALWPRFKLVFDLHLSSMRNANINTLWEDDVHPHYVMRRYAEFTASLIHLNVEYGDGQLELNMERLRMAVD DLIIKLASKFPKPKQQIVFLINNYDMTIAVVKEAGPEGGKIQMHFEELLKSNTTMFVEELLLEHFGDLIKFVKTRASEDPNSNPEKPISIAEVEPLVKDF ASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDCIKRIPGGPALNKDLISISSIMYEIRKYSRTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10016549 [exp]	0	1
AT1G47380			Protein phosphatase 2C family ...		Lus10042659 [exp]	1.7	0.8443
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10023378 [exp]	2.4	0.8527
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10040815 [exp]	4.9	0.8349
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000715 [exp]	6.6	0.8147
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10032241 [exp]	6.9	0.8409
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10025461 [exp]	9.6	0.8459
AT3G43220			Phosphoinositide phosphatase f...		Lus10027650 [exp]	10.7	0.7902
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037457 [exp]	13.3	0.8040
AT1G52260		ATPDI3, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10035870 [exp]	14.3	0.7602
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009247 [exp]	14.7	0.8238

Compare expression of checked genes

Lus10016549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.