Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 219 / 6e-68 Mitochondrial transcription termination factor family protein (.1) AT1G21150 189 / 2e-56 Mitochondrial transcription termination factor family protein (.1) AT1G61980 124 / 1e-31 Mitochondrial transcription termination factor family protein (.1) AT1G61970 122 / 3e-31 Mitochondrial transcription termination factor family protein (.1.2) AT3G46950 115 / 2e-28 Mitochondrial transcription termination factor family protein (.1) AT5G23930 115 / 2e-28 Mitochondrial transcription termination factor family protein (.1) AT5G64950 114 / 2e-28 Mitochondrial transcription termination factor family protein (.1) AT1G61960 114 / 4e-28 Mitochondrial transcription termination factor family protein (.1) AT1G62110 113 / 1e-27 Mitochondrial transcription termination factor family protein (.1) AT1G62120 112 / 1e-27 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040817 [exp] 600 / 0 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 445 / 2e-156 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 387 / 8e-134 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10016551 [exp] 291 / 2e-97 AT5G07900 144 / 3e-40 Mitochondrial transcription termination factor family protein (.1) Lus10016553 [exp] 270 / 2e-89 AT5G07900 171 / 7e-51 Mitochondrial transcription termination factor family protein (.1) Lus10040818 [exp] 268 / 2e-88 AT5G07900 129 / 2e-34 Mitochondrial transcription termination factor family protein (.1) Lus10040819 [exp] 241 / 6e-78 AT5G07900 130 / 2e-35 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 186 / 3e-55 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10040462 [exp] 165 / 1e-49 AT5G07900 93 / 1e-22 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G046700 [exp] 246 / 2e-78 AT5G07900 241 / 5e-76 Mitochondrial transcription termination factor family protein (.1) Potri.014G133200 [exp] 238 / 5e-75 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 234 / 9e-74 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.010G022700 [exp] 224 / 3e-70 AT5G07900 220 / 5e-68 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 224 / 1e-69 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.015G038400 [exp] 221 / 1e-68 AT5G07900 237 / 1e-74 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 221 / 1e-68 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 214 / 6e-66 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.011G005100 [exp] 212 / 3e-65 AT5G07900 199 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.012G046800 [exp] 210 / 1e-64 AT5G07900 228 / 4e-71 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10016550 pacid=23144805 polypeptide=Lus10016550 locus=Lus10016550.g ID=Lus10016550.BGIv1.0 annot-version=v1.0 ATGATCCACCGACTGCGGCATTTTCTGAAGAATTGTTACCTTCATAGCGATAGATCATTGCAGTCTCTACGGCAGTTTTCGAGCGAATCCTCGGTCAACT CTTTTGCTCTGTCTTATCTGATCAACGAATGTAATCTCCGTCCCGAGAAAGCCGCAGATTGTGTTAAGTACGCCCGTTTCAAATCTCCCGATAAACCAAA TCTAGTCCTGCAGTTCTTGAAAAACCTCGGATTCTCCAGCTCCCAAATCCCTATAATCATCGGTAGATGTCCCAGGCTGCTACATTGCGATCCTCAGAAA CGTTTCGTGACCAAGATTGATTTACTCGAATCCAACGGGTTCGCCCCCTCCGCCATTGTTCAAGTCCTATTAAGAGCTCCGAGGATTCTCCAGTCCAGCG TAGAAAAACACCTCCTCCCGAATCTCAACTTCGTTAAGAGCATCCTTCAATCCGATGAGAAGGTGATTCGTGCTGTTAGGCGAAGTCCATTCCTGTTGAC TTGCAATCTGGAGACGTATTTGATCCCGAGCATCAACATTCTGAGGGAGAACGGTGTTGGCGAATCGAGCATTGTCTGGTTACTCGAGTACAACCTGATG ATTATGATGATTTCCGAAACTCTGCTCTTTGAGGCTGTTGAGCGTGTGAAGAAGATGGGAATGGATCCAAAGTTGGTGACGTTCGGCCTTGCTGTTCGGA CGATCAGAGGGCTAACGAAAAAGTCGTGGGAGAGTAAGGTTGATGCTTATAAGAAATGGGGGTGGTCTGAGGAAGTGATTCTGAAAGCGTTTACTAAGTC TCCTTGGTGTATGGCTTTGTCTGTGAAGAAGATTATGGAGAATATGGATTACTATGTTAATGATATGGGGGTTGATACTTTGTATGTTGCAGACCGGCCT TTGTTGGTTTCGTTCAGCTTGAAGAAGAGGATTGTGCCCCGGGGTAGTGTCCTACGTGGCTTGGTTTCAAAAGGGTTGATTGAGTCGATAAATTTGCATC AGTCATTGAAGATTAGTAACGAGTTGTTTGAACAGAGGTTTTTGGTGCCGTACAAGGAGGAGGCTCCTGAACTTTTGGAGCTGTTTCGTGCGAGAATATC TCAAGAGTGA
AA sequence Show only first row Show all	>Lus10016550 pacid=23144805 polypeptide=Lus10016550 locus=Lus10016550.g ID=Lus10016550.BGIv1.0 annot-version=v1.0 MIHRLRHFLKNCYLHSDRSLQSLRQFSSESSVNSFALSYLINECNLRPEKAADCVKYARFKSPDKPNLVLQFLKNLGFSSSQIPIIIGRCPRLLHCDPQK RFVTKIDLLESNGFAPSAIVQVLLRAPRILQSSVEKHLLPNLNFVKSILQSDEKVIRAVRRSPFLLTCNLETYLIPSINILRENGVGESSIVWLLEYNLM IMMISETLLFEAVERVKKMGMDPKLVTFGLAVRTIRGLTKKSWESKVDAYKKWGWSEEVILKAFTKSPWCMALSVKKIMENMDYYVNDMGVDTLYVADRP LLVSFSLKKRIVPRGSVLRGLVSKGLIESINLHQSLKISNELFEQRFLVPYKEEAPELLELFRARISQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07900			Mitochondrial transcription te...		Lus10016550 [exp]	0	1
AT5G62350			Plant invertase/pectin methyle...		Lus10027198 [exp]	1.0	0.8720
AT1G70350			unknown protein		Lus10030618 [exp]	11.9	0.8661
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10040883 [exp]	11.9	0.8588
AT1G09130			ATP-dependent caseinolytic (Cl...		Lus10020649 [exp]	14.8	0.8300
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	23.3	0.8094
AT2G18410			unknown protein		Lus10009164 [exp]	23.5	0.8072
AT1G54385			ARM repeat superfamily protein...		Lus10007428 [exp]	26.3	0.8166
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10001566 [exp]	28.8	0.8194
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10037059 [exp]	31.2	0.8369
AT1G06070	bZIP	AtbZIP69	Basic-leucine zipper (bZIP) tr...		Lus10008150 [exp]	37.7	0.8113

Compare expression of checked genes

Lus10016550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.