Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 144 / 3e-40 Mitochondrial transcription termination factor family protein (.1) AT1G21150 115 / 1e-29 Mitochondrial transcription termination factor family protein (.1) AT1G61970 97 / 1e-22 Mitochondrial transcription termination factor family protein (.1.2) AT1G62110 95 / 6e-22 Mitochondrial transcription termination factor family protein (.1) AT1G61980 94 / 6e-22 Mitochondrial transcription termination factor family protein (.1) AT1G61960 92 / 5e-21 Mitochondrial transcription termination factor family protein (.1) AT3G46950 91 / 1e-20 Mitochondrial transcription termination factor family protein (.1) AT1G62085 89 / 6e-20 Mitochondrial transcription termination factor family protein (.1) AT5G23930 87 / 3e-19 Mitochondrial transcription termination factor family protein (.1) AT1G62120 85 / 1e-18 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040818 [exp] 485 / 2e-175 AT5G07900 129 / 2e-34 Mitochondrial transcription termination factor family protein (.1) Lus10040462 [exp] 334 / 1e-117 AT5G07900 93 / 1e-22 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 303 / 3e-102 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 291 / 8e-98 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 283 / 2e-94 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10040819 [exp] 250 / 5e-83 AT5G07900 130 / 2e-35 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 241 / 6e-78 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 165 / 2e-48 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10016553 [exp] 118 / 9e-32 AT5G07900 171 / 7e-51 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038500 [exp] 155 / 8e-45 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.012G046700 [exp] 155 / 1e-44 AT5G07900 241 / 5e-76 Mitochondrial transcription termination factor family protein (.1) Potri.010G022700 [exp] 154 / 2e-44 AT5G07900 220 / 5e-68 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 149 / 2e-42 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.014G133200 [exp] 148 / 5e-42 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1) Potri.008G216200 [exp] 147 / 8e-42 AT5G07900 217 / 8e-67 Mitochondrial transcription termination factor family protein (.1) Potri.015G038400 [exp] 142 / 6e-40 AT5G07900 237 / 1e-74 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 142 / 1e-39 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 141 / 3e-39 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.012G046800 [exp] 136 / 1e-37 AT5G07900 228 / 4e-71 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10016551 pacid=23144860 polypeptide=Lus10016551 locus=Lus10016551.g ID=Lus10016551.BGIv1.0 annot-version=v1.0 ATGATTAACCGGATGCAATCTGTTCTAAAGATTCGACACCTCCATAGCGATGGATTACTATGTTTCGCAGTTCGAAACCATCCGCGGCAGTTCTCGAACG AATCTGCTGGCAATCAAACCACCACCGCCGGCCCTATTGCTTTGTCTTACCTCATCAACGAATGTGGCATCCGTCCCGAAAAGGCCGCATCCGCCGTCAA ATACGCCCAATTCAAAACCCCAGAAAAGGCCAATTCGGTCTTGCAATTCTTCAGAACCCTCGGCTTCTCCACCGCCGACATCTCCAAAATCATCGGGAGG CGTCCTCGTCTGCTACTTTCCGATCCGGACAAACAATTCGCTCCCCGGATTAGTTTCCTGGAATCGCAAGGGTTTTCTCCCTCCGACATTGCTCAAGTCT TACTGAGAGGTCCTGAGATATTCTATTCCAGCGTAGCCAAACAGCTGCTACCCAATTTTGAATTCATCAAGAGCGTCGTCCTTTCCAGTGAGAAGGCTGT TCAAGCCATTAGGCGAAGTCCTTTGTTGTTGACTTGTAAGCTGGAGACGTATTTGATCCCGAGCATCGAGACTCTGAAGGAAAACGGGATTAGCGACTCG AATATTGTACGGTTGCTTGTCTCTAGCCCTTTATTAACTATGTTGACACCGCAGGCTAAATTATCCGAGGCTGTTGAGCGTGTGAAGGAAATGGGGATTG ATCCTAAGTCGACTACGTTTGCTGTTGCTATGGAGACGATCAAAGCGACTAAAGTGACGTGGGATAGTAAGGTTGATGCTTATAAGAAGTGGGGGGGTGG TCTGATGAAGTGA
AA sequence Show only first row Show all	>Lus10016551 pacid=23144860 polypeptide=Lus10016551 locus=Lus10016551.g ID=Lus10016551.BGIv1.0 annot-version=v1.0 MINRMQSVLKIRHLHSDGLLCFAVRNHPRQFSNESAGNQTTTAGPIALSYLINECGIRPEKAASAVKYAQFKTPEKANSVLQFFRTLGFSTADISKIIGR RPRLLLSDPDKQFAPRISFLESQGFSPSDIAQVLLRGPEIFYSSVAKQLLPNFEFIKSVVLSSEKAVQAIRRSPLLLTCKLETYLIPSIETLKENGISDS NIVRLLVSSPLLTMLTPQAKLSEAVERVKEMGIDPKSTTFAVAMETIKATKVTWDSKVDAYKKWGGGLMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07900			Mitochondrial transcription te...		Lus10016551 [exp]	0	1
AT1G21150			Mitochondrial transcription te...		Lus10016552 [exp]	3.5	0.6867
AT5G07900			Mitochondrial transcription te...		Lus10040462 [exp]	3.5	0.7742
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10042358 [exp]	6.9	0.7743
AT4G33480			unknown protein		Lus10003851 [exp]	11.7	0.7264
AT3G14750			unknown protein		Lus10005563 [exp]	14.4	0.6198
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10004353 [exp]	15.3	0.7324
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	19.4	0.6980
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	26.2	0.6850
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	37.1	0.6778
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10040358 [exp]	40.3	0.6929

Compare expression of checked genes

Lus10016551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.