Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 171 / 1e-50 Mitochondrial transcription termination factor family protein (.1) AT1G21150 117 / 8e-31 Mitochondrial transcription termination factor family protein (.1) AT1G62010 82 / 1e-17 Mitochondrial transcription termination factor family protein (.1) AT3G46950 76 / 1e-15 Mitochondrial transcription termination factor family protein (.1) AT1G61980 76 / 1e-15 Mitochondrial transcription termination factor family protein (.1) AT5G64950 74 / 4e-15 Mitochondrial transcription termination factor family protein (.1) AT1G79220 74 / 5e-15 Mitochondrial transcription termination factor family protein (.1) AT1G61990 73 / 1e-14 Mitochondrial transcription termination factor family protein (.1) AT1G61970 73 / 1e-14 Mitochondrial transcription termination factor family protein (.1.2) AT1G61960 71 / 6e-14 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040820 [exp] 444 / 6e-158 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 280 / 3e-93 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 270 / 9e-90 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 265 / 1e-87 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10040819 [exp] 233 / 2e-76 AT5G07900 130 / 2e-35 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 127 / 3e-34 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10016552 [exp] 117 / 2e-33 AT1G21150 69 / 4e-15 Mitochondrial transcription termination factor family protein (.1) Lus10016551 [exp] 118 / 7e-32 AT5G07900 144 / 3e-40 Mitochondrial transcription termination factor family protein (.1) Lus10008688 [exp] 119 / 3e-31 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G133200 [exp] 178 / 1e-53 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 169 / 2e-50 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 159 / 1e-46 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 158 / 5e-46 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.012G046700 [exp] 157 / 7e-46 AT5G07900 241 / 5e-76 Mitochondrial transcription termination factor family protein (.1) Potri.011G005100 [exp] 157 / 1e-45 AT5G07900 199 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.010G022700 [exp] 150 / 3e-43 AT5G07900 220 / 5e-68 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 146 / 2e-41 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.004G013000 [exp] 141 / 2e-39 AT5G07900 193 / 1e-57 Mitochondrial transcription termination factor family protein (.1) Potri.015G038400 [exp] 139 / 1e-38 AT5G07900 237 / 1e-74 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10016553 pacid=23144846 polypeptide=Lus10016553 locus=Lus10016553.g ID=Lus10016553.BGIv1.0 annot-version=v1.0 ATGTTGCGCATATGCCCCGAGATTTTCAGCTCCAGCGTAGAGAACAAGCTGCTCTCTAATTTCAACTACGTTAGAGATGTGATTCAGTGCGAGAACAAAG TCCTTCGTGCCATAACCCGCACCCCGGGTCTGTTAACTTGGAAGCTGGAGTCCCGTTTGGTGCCCAACATCAAGATTCTTCGAGAATCCGGCTCGTCTGA ATCCAACGTCGTCATGCTGCTTCTGAACAAGTCTATGGTTCTGCTAACTACACAGTACAATTTCTCGCAGGTTGTCGATTGCGTAAAGCGAATGGGGTTT CCTCCTCAGTCGACGACTTTCGGTGTAGCGATCCAGGCAGTGAGAGGAATGATCGACGAGTTATGGAGAAATAAGGTTGAAGCTTACAAGAAGTGGGGAT GGTCTGAGGAAGTGACTTTGAAAGCGTTCACAAAGTGTCCATGGTGTATGGTATTGTCCGAGAAGAAGATCATGGAAAACATGGACTATTATGTTAACCA AATGGGATTCGAGCCTTTAGAGATTGCGCATCGACCTACTGTGCTTTCGTACAGCTTGAAGAAGAGGATCGTGCCGCGGGATTCTGTTCTGCAGGTGTTG GTATCGAAAGGGCTGGTCGAGTCTCGAACAATGTCGAATGCGCTGATGATAGATGATGAGAAATTCAGAAGCAAGTTTGTCCTTCCTTATGAGGTCGAAG CTCCTGAGTTTTTCGAGCTTTTCCGCAAAATGCTGGCCCGAGCTGAAGAGAAGGATCCAGAGATGTGA
AA sequence Show only first row Show all	>Lus10016553 pacid=23144846 polypeptide=Lus10016553 locus=Lus10016553.g ID=Lus10016553.BGIv1.0 annot-version=v1.0 MLRICPEIFSSSVENKLLSNFNYVRDVIQCENKVLRAITRTPGLLTWKLESRLVPNIKILRESGSSESNVVMLLLNKSMVLLTTQYNFSQVVDCVKRMGF PPQSTTFGVAIQAVRGMIDELWRNKVEAYKKWGWSEEVTLKAFTKCPWCMVLSEKKIMENMDYYVNQMGFEPLEIAHRPTVLSYSLKKRIVPRDSVLQVL VSKGLVESRTMSNALMIDDEKFRSKFVLPYEVEAPEFFELFRKMLARAEEKDPEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07900			Mitochondrial transcription te...		Lus10016553 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10007208 [exp]	12.9	0.6302
AT1G30670	bHLH	bHLH052	basic helix-loop-helix (bHLH) ...		Lus10005451 [exp]	47.9	0.5983
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10041151 [exp]	58.0	0.5797
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011472 [exp]	58.3	0.5814
					Lus10012623 [exp]	87.4	0.5297
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10001066 [exp]	101.4	0.5646
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10026642 [exp]	113.8	0.5242
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10041540 [exp]	115.1	0.5284
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	119.7	0.5242
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	120.2	0.5242

Compare expression of checked genes

Lus10016553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.