Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46550 377 / 1e-128 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT2G45470 137 / 4e-36 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 116 / 1e-28 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT5G55730 110 / 3e-26 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT4G12730 103 / 3e-24 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT5G44130 85 / 1e-18 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT5G60490 84 / 4e-18 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT2G20520 78 / 3e-16 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT1G03870 76 / 1e-15 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT2G04780 76 / 3e-15 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040821 [exp] 667 / 0 AT3G46550 391 / 6e-134 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Lus10009235 [exp] 152 / 2e-41 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10016617 [exp] 116 / 1e-28 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10012344 [exp] 116 / 1e-28 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10022517 [exp] 113 / 1e-27 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10006391 [exp] 114 / 2e-27 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10001178 [exp] 113 / 2e-27 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10001752 [exp] 99 / 1e-22 AT4G12730 340 / 1e-115 FASCICLIN-like arabinogalactan 2 (.1) Lus10012351 [exp] 86 / 9e-19 AT2G04780 223 / 9e-73 FASCICLIN-like arabinoogalactan 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G174900 [exp] 483 / 8e-170 AT3G46550 326 / 2e-108 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.018G097000 [exp] 482 / 1e-169 AT3G46550 315 / 3e-104 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.014G071700 [exp] 147 / 1e-39 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.001G367900 [exp] 119 / 1e-29 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G168100 [exp] 117 / 4e-29 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.011G093500 [exp] 117 / 4e-29 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G162900 [exp] 92 / 4e-21 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.002G223300 [exp] 86 / 9e-19 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.013G151300 [exp] 83 / 7e-18 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.012G127900 [exp] 82 / 1e-17 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10016554 pacid=23144876 polypeptide=Lus10016554 locus=Lus10016554.g ID=Lus10016554.BGIv1.0 annot-version=v1.0 ATGGCACCTCATCCTTCCATTCACCATCTCCGATTCTACCTCCTCCTCCTCCTTATCGCCATCCCATCCGCCGCCGCATCAATCGACATCGCCACCATCC TCTCCCCTTACCCAGATTTCTCCTCCTTCTCTTCCCTCCTCGCCTCAACCCCATCCTTAACAAACGAAATCTCCCACCGTTCATCCATAACCTTACTCGC CGTCCCCAACGCATACTTCTCGTCCTCCGTGGAACTCACGCGCCACCTCTCCCCTTCCGCGCTTTACGACCTCCTCAGCTACCACATCCTCCTCCAGTAC TTCTCCTTGTCCGACCTCCGCCGCATCCCTCCAGCTGGAATCCTCGTCACCACGCTCTACCAAACGACGGGTCGGGCGCCCTCCAATTTCGGGTCGGTCA ACGTGACCCGCGACCCTGGCACCAACTCCTCCGTCACTATCCATTCCCCTGCCTCCTACTCGAATTCCAACGCTACTGTTCTGTCCCTCGTGAAATCACA GCCGTACAATCTCACGATCCTGTCCGTCAATTCATTACTCGTCCCTTACGGATTCAATCTGATGGCGTCGGAGACCCGGCCTCCTCTTGGGATCAACATT ACCAAGGCCTTAATCGACGGCCACAATTTCTTCGTTGCGGCGTCGATGCTTGCTGCTTCGGGAGTGGTGGATGAGTTCGAGGCCGACGAAGGTGGCGCCG GGATTACTCTGTTCGTCCCGACCGATGCGGCGTTTGCAGATCTGCCTGGGACGGTGAGCTTGCAGTCGCTGCCAGCGGAGAGGAAGGCGGTGGTGCTGAA ATTCCACGTGCTCCACTCTTACTACCCGCTCGGTTCGCTCGAGTCGATCGTGAACCCGGTCCAGCCCACTCTGGCGACCGAGGACATCGGGGCGGGTCGG TTCACGCTGAACATTTCCCGGGTCAACGGGTCAGTGGCGATAGATTCGGGAATTGTACAAGCTTCGGTGACCCAGACAGTGTTCGATCAGAATCCGGTGG CTATTTTTGGGGTGTCGAGAGTTCTTCTCCCCAAGGAGGTCTTCGGGAAGAATCCGATTCCGTCGACAAACAAACCCGGAAAATCCGACCCGCCCGAGGC GTCAATGTCGCCGGAGAAATCGCCGGATACGGATACGCAGCCGTCGCACCTGTCGTCGCCGCCGGATTTCAGGGAGGACATCAAATCAGGAGGTGGCGGT GGATTAAGGAGATTGTTTTTATCACTTGCTTCTCCGCCTTGTATAGTACTATTGTATTTATTCGTATGA
AA sequence Show only first row Show all	>Lus10016554 pacid=23144876 polypeptide=Lus10016554 locus=Lus10016554.g ID=Lus10016554.BGIv1.0 annot-version=v1.0 MAPHPSIHHLRFYLLLLLIAIPSAAASIDIATILSPYPDFSSFSSLLASTPSLTNEISHRSSITLLAVPNAYFSSSVELTRHLSPSALYDLLSYHILLQY FSLSDLRRIPPAGILVTTLYQTTGRAPSNFGSVNVTRDPGTNSSVTIHSPASYSNSNATVLSLVKSQPYNLTILSVNSLLVPYGFNLMASETRPPLGINI TKALIDGHNFFVAASMLAASGVVDEFEADEGGAGITLFVPTDAAFADLPGTVSLQSLPAERKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDIGAGR FTLNISRVNGSVAIDSGIVQASVTQTVFDQNPVAIFGVSRVLLPKEVFGKNPIPSTNKPGKSDPPEASMSPEKSPDTDTQPSHLSSPPDFREDIKSGGGG GLRRLFLSLASPPCIVLLYLFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10016554 [exp]	0	1
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	1.0	0.9179
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	6.0	0.8938
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10042201 [exp]	10.8	0.8685
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10037033 [exp]	11.0	0.8706
AT3G12110		ACT11	actin-11 (.1)		Lus10004956 [exp]	11.5	0.8913
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10012894 [exp]	12.1	0.8232
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10038318 [exp]	12.6	0.8788
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10029924 [exp]	12.7	0.8770
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10026813 [exp]	13.1	0.8596
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10007533 [exp]	13.1	0.8789

Compare expression of checked genes

Lus10016554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.